Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4242 ATGTCTCATAAACCAAAAACCAATGTCAAATACCCTTCTTTCTCTTTCATTGATTATTCAACAACTAATCATACTGCAAAACAAAAGATCATATGGACTTTTTCTTATTCTGTTCCTACTCATAATCACAATAGTGTTGGTAAACAAAACAAACACTCATGTGATATTTGCAACAAGGTTTTTACTTCTAACAAAGCATTGAATGGACATATGAGGTTTCACTCTCAAAAAGGTATTACAAACACACCAACTGCAGCACCATCTTCCATTGATGATCAGTTTCTACCACCCAAGAAACGGCTGGCGCTCAGAAGAAAAAGATATTGCGATATTGATGATGAACTTACTGCTGCTGCTGAAAATACTCTGAATCACAGCGGCGCTAAAAGGAAAAAAATTATGGATTTGAACGAGCTTCCAAGTGATGAGTTTGAAGATGAATCCAATTAG 450 0.3556 MSHKPKTNVKYPSFSFIDYSTTNHTAKQKIIWTFSYSVPTHNHNSVGKQNKHSCDICNKVFTSNKALNGHMRFHSQKGITNTPTAAPSSIDDQFLPPKKRLALRRKRYCDIDDELTAAAENTLNHSGAKRKKIMDLNELPSDEFEDESN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4242 149 Pfam C2H2-type zinc finger 52 76 - -
Mal1g4242 149 SUPERFAMILY beta-beta-alpha zinc fingers 49 77 IPR036236 -
Mal1g4242 149 SMART c2h2final6 52 74 IPR013087 -
Mal1g4242 149 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Mal1g4242 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Mal1g4242 149 Gene3D Classic Zinc Finger 31 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4242 Mal-Chr1 96276612 96277061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4242 37 90 C2H2 Transcription Factor Family AT2G28200 40.000 7.47e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g4242 zf-C2H2_6 9.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4242 - K09228 mtr:MTR_1g085590 128.257