Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4238 ATGTCTCATAAACCAAAAACCAATGTCAAATACCCTTCTTTCTCTTTCATTGATTATTCAACAACTAATCATACTGCAAAACAAAAGATCATATGGACTTTTTCTTATTCTGTTCCTACTCATAATCACAATAGTGTTGGTAAACAAAACAAACACTCATGTGATGTTTGCAACAAGGTTTTTACTTCTAACAAAGCATTGAATGGACATATGAGGTTTCACTCTCAAAAAGGTATTACTAACACACCAACTGCAGCACCATCTTCCATTGATGATCAGTTTCTACCACCCAAGAAACGGCTGGCGCTCAGAAGAAAAAGATATTGCGATATTGATGATGAACTTACTGCTGCTGCTGAAAATACTCTGAATCACAGCGGCGCTAAAAGGCAAAAAATTATGGATTTGAACGAGCTTCCAAGTGATGAGTTTGAAGATGAATCCAATTAG 450 0.36 MSHKPKTNVKYPSFSFIDYSTTNHTAKQKIIWTFSYSVPTHNHNSVGKQNKHSCDVCNKVFTSNKALNGHMRFHSQKGITNTPTAAPSSIDDQFLPPKKRLALRRKRYCDIDDELTAAAENTLNHSGAKRQKIMDLNELPSDEFEDESN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4238 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 47 81 IPR044653 GO:0003700
Mal1g4238 149 SMART c2h2final6 52 74 IPR013087 -
Mal1g4238 149 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Mal1g4238 149 SUPERFAMILY beta-beta-alpha zinc fingers 49 77 IPR036236 -
Mal1g4238 149 Pfam C2H2-type zinc finger 52 76 - -
Mal1g4238 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Mal1g4238 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 49 146 - -
Mal1g4238 149 Gene3D Classic Zinc Finger 31 95 - -
Mal1g4238 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 47 81 - -
Mal1g4238 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 49 146 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4238 Mal-Chr1 96239877 96240326 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4238 37 90 C2H2 Transcription Factor Family AT2G28200 38.182 1.22e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g4238 zf-C2H2_6 7.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4238 - K09228 mtr:MTR_1g085590 127.102