Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g4215 | ATGGAGGAAGATATGGAAATTGATATTATCGACGTTCCTGATACCCCAGATAGGTCAAATGCTGGAAACAATGATCGAAAATGTGTAGGTAATCCGGAAAAGAGGGGAAGGGCTTTTCCTGTTGCTGATGAAATAAGTAAACGTAACAACTATATACTATTATCCCCTGATAAACCCCAAAAACCTTCCATATTTAGGAGAGCCCAAACTGAGAAAGTTTCTGGACTTGGAACATCACGCTCTAGTGGAGCTGAAAGGATGGAGAAAGGGAAAAATGTAAGCTCTAACATTCCTTCAAAGTCATCTCACCATGGGGGTATTTCTGTTTTTGATTTGACTGAAGAGAATGGGCAGTTCCAACCACCAAAACCAGCTTTCTCACATCGTGGATCAAGAGATAACACAATTGAAGACAAGAAAGAATTGAAAGCAATTATTGGGAATTCTTCGTTACCCTTAATCACTGATTCATCTACATCTAGAAATGCCGTCACTGGAAAGTGTAAACTAGATAATAAAACACTTCCTGGTCCTAATAGATTGATGGACCGTGGCAAGAGCATTTCTCTGTCTAATGATTCTCAATCTAAAGCTGAAAAGCAAGTTTCTTTGCCTCCTCGTGTTTCCACTGTTCCAAGCGGTAGAGGGAACAAGAGATTGGTGCGAAATGGGTGCATTTCACCACAAAACATTGCAACAAAGGCAAAACAATCAGCTGAACAGAGCATTCCTCTAACCAATAATGTTGCTGGACATTCAGTGTCTACCAATACAATGTCTCCAATTAGTGTTGATGATATTGTTGCTGAAGAGAGAGGTGGTGGTAGAGTGAAAGGAAAGGGAGTACATATTCATCCTTCATCACATGGAACTATTCACACCGGTAGCAGCAGCCCTGTGGTCAAATATGAAGAGGCCAGTGGTAGCAGTAATATACCAAGAAATGGATTTGAAAACTGGGAGAGACAAGGTGGTTGGACAACTACACATAATGATCAACATTTGTATGATGTGAATGGGCATCATTCAAGGAGAAGTTATGTCGAAAGATTTACTCACAGACAAAATATGAAAAGACTGGACAGAAGTGAAACTGGGAGCAGTCAAAGTGGCAAGGATGTTCCAGCTTCACTGATTATTCCAGAGGTAGGTCAGTCAACTGGACCTAGTACTACTGCTGACTCGGTGACTAAAAGGCCAAAGAAACGTGAATCATCTTCTAGAAATTCTAAAGTAGCATCTCATAATTCTGAAAATACATTCGTCAACTCATATGGGGAATCATCAAGTTCATCCCGAAGTTGTGCCTTGGATCCTGAATTAGCTGCGTTGTTATCCATACCAAGTTTCACCAATGAACTTAACGAAGGTTTACATGACAATGACAACAATATTTCGGTTGCTCGGGCAATGCAATTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTATATAATGATGATTCTTTTGAAGGCAGTTGGATTGATGAACATTTAGCACAGGAGCTGCAGGATGCAAGGGATCTTTTTCACACATCTACTGATAATCATCAGATACCTCATCCTGCACAGATTCCGAGGGAATATAGACAGCCACGTCCCCGACCTCATCAAAATCCTTCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTCTTTCTAATAGAACGACACAATTTAGGAGTCGCATGCCAACTCGATCGTCAAGACCTACCATATCATCTAGAGGAAGAGGAAGAGGAAGAGCAAGACTCCCTCGGTTTCCTCTAGATATGGACCTAAACATGAGACTTGATATATTGGAAGCATTAGAGAATGCCGTAGGGGATTTTAATGATATGGGAATGGGTGATGACATCCTTAATGCTCATCGTGATTTCAATGAAGATGATTATGAAATGTTATTGGCTCTTGATGAACACAATCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGGTTGCCACAGTCCACTGTCCAGACTGACAACTACACCGAGGATTGTGCCGTATGTCTCGAGACCCCTGTCAAGGGAGACATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGATTGCATTGATCCTTGGCTTGGTAGGAAAAGTTCGTGCCCCGTGTGCAAGTCATCTATCACCTGA | 2154 | 0.415 | MEEDMEIDIIDVPDTPDRSNAGNNDRKCVGNPEKRGRAFPVADEISKRNNYILLSPDKPQKPSIFRRAQTEKVSGLGTSRSSGAERMEKGKNVSSNIPSKSSHHGGISVFDLTEENGQFQPPKPAFSHRGSRDNTIEDKKELKAIIGNSSLPLITDSSTSRNAVTGKCKLDNKTLPGPNRLMDRGKSISLSNDSQSKAEKQVSLPPRVSTVPSGRGNKRLVRNGCISPQNIATKAKQSAEQSIPLTNNVAGHSVSTNTMSPISVDDIVAEERGGGRVKGKGVHIHPSSHGTIHTGSSSPVVKYEEASGSSNIPRNGFENWERQGGWTTTHNDQHLYDVNGHHSRRSYVERFTHRQNMKRLDRSETGSSQSGKDVPASLIIPEVGQSTGPSTTADSVTKRPKKRESSSRNSKVASHNSENTFVNSYGESSSSSRSCALDPELAALLSIPSFTNELNEGLHDNDNNISVARAMQLEADERLARELQEQLYNDDSFEGSWIDEHLAQELQDARDLFHTSTDNHQIPHPAQIPREYRQPRPRPHQNPSNRRRTVPQVPLSNRTTQFRSRMPTRSSRPTISSRGRGRGRARLPRFPLDMDLNMRLDILEALENAVGDFNDMGMGDDILNAHRDFNEDDYEMLLALDEHNHQHTGASTNLINRLPQSTVQTDNYTEDCAVCLETPVKGDIIRHLPCLHKFHKDCIDPWLGRKSSCPVCKSSIT* | 718 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Mal1g4215 | 717 | ProSiteProfiles | Zinc finger RING-type profile. | 672 | 713 | IPR001841 | - | |
| Mal1g4215 | 717 | SMART | ring_2 | 672 | 712 | IPR001841 | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 350 | 433 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 276 | 299 | - | - | |
| Mal1g4215 | 717 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 638 | 717 | IPR013083 | - | |
| Mal1g4215 | 717 | SUPERFAMILY | RING/U-box | 664 | 716 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 185 | 210 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 53 | 107 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 115 | 134 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 544 | 577 | - | - | |
| Mal1g4215 | 717 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 566 | 715 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 516 | 586 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 88 | 103 | - | - | |
| Mal1g4215 | 717 | PANTHER | - | 566 | 715 | - | - | |
| Mal1g4215 | 717 | Pfam | Ring finger domain | 671 | 713 | IPR001841 | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 410 | 433 | - | - | |
| Mal1g4215 | 717 | MobiDBLite | consensus disorder prediction | 170 | 221 | - | - | |
| Mal1g4215 | 717 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 672 | 713 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g4215 | Mal-Chr1 | 95065490 | 95070950 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g4215 | 3 | 717 | C3H Transcription Factor Family | AT1G04790 | 32.893 | 8.27e-78 | 260 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g4215 | - | - | cam:101513161 | 857.44 |