Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4175 ATGGGTGAGGTGGCAGAGTTGCACTCCGAGTCTCTGCAGTCTGAATGCAATGACACGAAACATACAACCGAAGAAGACGTTAATCCTCCAAAATCAAACCTGGAATCCTTGCCTGGAGAAGAATCAAGTCAATCTATAAACACAAATGATTTGCAAGATAAAGGATATATGGAATATGGATGCCAGCATTATCGGAGAAGATGCCGAATCAAGGCTCCCTGTTGCAATGAAATTTTTGATTGCCGCCATTGTCACAATGAGTCAAAAAATGATATCAACGTAGATTATAAGCATAGACACGACATGCCCCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGCACTGAACAAGAGGTTCAGCAAAACTGTATTAATTGCGGTGTTTGTATGGGAAAGTACTTCTGTGAGACATGCAAGCTCTTTGATGACGATATATCTAAGCAGCAATACCATTGTAATAGCTGTGGAATTTGCAGAACTGGTGGACTGGAGAATTTCTTCCATTGTAACAACTGTGGTTGTTGCCACTCAAATATGCTGCAAAACAGTCACCCCTGTGTGGAAGGGGCAATGCGTCATGATTGCCCCATTTGTTTTGAGTATTTATTTGAATCAATAAAAGATGTCGTTGTTTTGCCTTGCGGACATACAATCCATAGAAGCTGTATGTATGAAATGAGAGAACATCACCGGTATACATGCCCTCTCTGTTTGAAGTCGTTCTGTGATATGTCAAGGGTTTGGGAGAGATTGGACATCGAGATTGCTGCTACGCCAATGCCTGAGCCATACCAAAACAAAATGGTTTGGATCCTGTGCAATGACTGCGGAGAAACTTGTCATGTTCGGTTCCATTTTGTGGCTCTAAAATGCATCAACTGCGCATCCTATAACACAAGACAGACGAGAGGCTGA 921 0.4224 MGEVAELHSESLQSECNDTKHTTEEDVNPPKSNLESLPGEESSQSINTNDLQDKGYMEYGCQHYRRRCRIKAPCCNEIFDCRHCHNESKNDINVDYKHRHDMPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLFDDDISKQQYHCNSCGICRTGGLENFFHCNNCGCCHSNMLQNSHPCVEGAMRHDCPICFEYLFESIKDVVVLPCGHTIHRSCMYEMREHHRYTCPLCLKSFCDMSRVWERLDIEIAATPMPEPYQNKMVWILCNDCGETCHVRFHFVALKCINCASYNTRQTRG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4175 306 ProSiteProfiles Zinc finger RING-type profile. 197 239 IPR001841 -
Mal1g4175 306 Gene3D - 268 306 - -
Mal1g4175 306 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
Mal1g4175 306 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Mal1g4175 306 MobiDBLite consensus disorder prediction 13 28 - -
Mal1g4175 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 251 IPR013083 -
Mal1g4175 306 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Mal1g4175 306 SUPERFAMILY RING/U-box 196 243 - -
Mal1g4175 306 Pfam Zinc-ribbon 244 302 IPR039512 -
Mal1g4175 306 MobiDBLite consensus disorder prediction 35 49 - -
Mal1g4175 306 Pfam RING-type zinc-finger 197 237 IPR027370 -
Mal1g4175 306 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
Mal1g4175 306 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 11 306 - -
Mal1g4175 306 MobiDBLite consensus disorder prediction 1 49 - -
Mal1g4175 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 306 - -
Mal1g4175 306 SMART ring_2 197 239 IPR001841 -
Mal1g4175 306 SUPERFAMILY CHY zinc finger-like 58 132 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4175 Mal-Chr1 93347265 93350852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4175 59 306 C2H2 Transcription Factor Family AT3G18290 41.897 2.46e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4175 K10144 - gmx:100803569 558.91