Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4172 ATGGCTCCGAGATACGACAACGTTAATGATATTTCTCCTGCAAAGGAAAACTGGAATATCATGGTGCGGGTCGTTCGACTATGGTTTGTTAAGGATATGAACAAAGACAAGTTACCTTATTCATTGGAAATGATTCTGATGGATAAAAAGGGTGAAGGAATTCACGCATCTGTTAGACATACTCTGATCTACAAATATGAGAAAGAATTTACTGAAGATCGTGTGTATTTTATTGGAAATTTCAGTGTTGCTTCTAATGTGGGGTCCTATAGGACAACACAACATCCATACAAGATTAACTTTCAGTATGGAACCAAGATCAAACAATGTGATCAAAAATTGGTCCCTGCTGACATGTATAAGATCAATGATCCTCGAGAGATATTTCAATCTGGATATGATACGGATTATTTGATTGATGTCATGGGAATCTTGAAAGCAGTCGGTGTTGAGAAGTCCTATACCCACAACGGGAGTCAATCCAAAATGATTCCCATCGAGTTGGATTATGATGGGTTTCGTTTCAAGGTTACTTTGTTTGGATCGTATGTGGACGAATTGAATGCTTTTGTAGCATCTGGTGAGACGGATAATGTTGTGGTTGCCGTCCTTTTGACCAAAATCAAGCTATTTCAAGGTCATGCGACTATACAGAATACCCTTTATGCTACAAAAATGATGTTCAACCCAACTTTCTCAGTGAATTTAAAGAAAAGGACTGTCGAGAATGATAATTCTCCTTCTCCTGGTATTTCTAAGATTGTGGATGCATCTAAAGTTAGTATTGAGGAAGACTTTCTCAATTTGACACCGATGACCACCATTGAAGGGCTTAAGGATTGTGCAACAGAGAAAATGTTTGTGGTGTTTGGTACTGTAAATGTTATTTTTGATGATTCTGATTGGTGGTATACTGCTTGCGTCTGTAACAAAAAAGTATATCCTGATGAACGGATGTACTTTTGTTCAAAGTGCAATAAACATGTGTTGAATGTGACACCGAGGTTCATGATCAAGATTAGAGTTATTGATCATACCGACTCAGCTAAGTTTGTGCTATTTGACCGCGATGCTTCTGAATTATTTAAAAAGTCGTGTGTTGAAATGCTCGACTCTGATGGAATGGGAAATAATGCGTCTAATATCCCCCAAGAAATTGCTGATATGGTGGGGAAATCATACCTGTTCAAAGTGGAGTCAAATATTAATTTTGTTGCTATGTATGATAAATCATATCGGGTGAAGAAAGTTGCATCGGATCCTGTATTAGTTGGGAAGTTTAAGACTAAATATGATGATTTGATGAAGAATGATCGTGAAGATGATGTTGGTTTGGATGATGGTGTTGCTGATCAGGGTGAAGATATTGTTGCTCTGGTATGTGTTCTTAAAATATTAGTGATATCATGA 1410 0.373 MAPRYDNVNDISPAKENWNIMVRVVRLWFVKDMNKDKLPYSLEMILMDKKGEGIHASVRHTLIYKYEKEFTEDRVYFIGNFSVASNVGSYRTTQHPYKINFQYGTKIKQCDQKLVPADMYKINDPREIFQSGYDTDYLIDVMGILKAVGVEKSYTHNGSQSKMIPIELDYDGFRFKVTLFGSYVDELNAFVASGETDNVVVAVLLTKIKLFQGHATIQNTLYATKMMFNPTFSVNLKKRTVENDNSPSPGISKIVDASKVSIEEDFLNLTPMTTIEGLKDCATEKMFVVFGTVNVIFDDSDWWYTACVCNKKVYPDERMYFCSKCNKHVLNVTPRFMIKIRVIDHTDSAKFVLFDRDASELFKKSCVEMLDSDGMGNNASNIPQEIADMVGKSYLFKVESNINFVAMYDKSYRVKKVASDPVLVGKFKTKYDDLMKNDREDDVGLDDGVADQGEDIVALVCVLKILVIS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4172 469 SUPERFAMILY Nucleic acid-binding proteins 131 233 IPR012340 -
Mal1g4172 469 Gene3D - 115 246 IPR012340 -
Mal1g4172 469 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 374 - -
Mal1g4172 469 PANTHER REPLICATION FACTOR A 1, RFA1 20 374 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g4172 469 Gene3D - 257 422 IPR012340 -
Mal1g4172 469 Gene3D - 6 112 IPR012340 -
Mal1g4172 469 Pfam Replication factor-A C terminal domain 286 403 IPR013955 -
Mal1g4172 469 SUPERFAMILY Nucleic acid-binding proteins 283 405 IPR012340 -
Mal1g4172 469 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Mal1g4172 469 CDD RPA1_DBD_C 287 423 IPR013955 -
Mal1g4172 469 CDD RPA1_DBD_B_like 140 232 - -
Mal1g4172 469 CDD RPA1_DBD_A_like 20 107 - -
Mal1g4172 469 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4172 Mal-Chr1 93241071 93249575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4172 1 398 Core DNA Replication Machinery Family AT5G08020 21.292 1.30e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4172 - - mtr:MTR_2g048560 731.865