Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4171 ATGGAGGCCCTTGGTTCTGTGGATGACCTCTTGGATTTCTCATCTGACATTGGTGAGGATGATGATGACACACCTAAGAAAGCCTTGCCTTCACTCAAACCAGATTGCAGTGATCCACCTTCACTTAATCCATTGGCCCTGGATGATCCCAATCATTCACTTTCTGAGGAGGTTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTTGACCTGGCCTGCATTCAACCGAATATTTTGACGCATCAAACGAGAGCCCCAATGCTCGAGAATAGCACAAGCAGCAGCAACAGCAATAACAGCTCCAACAGCATTACCCTCTTAAGTGGCTACAATCAAATGAAGTTCCCTGTCCGTGCCCGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGTCTTTCTGACACCTCGAACATGCAATTCCCGTGGAAACCACCAAGTAACAAAACCTCCAAAGAACAAGCGAAACAAACCTCAACCATTGGGAGGGAATGTCATCATTGTGGAATTGATAATACTCCACAATGGCGTGCAGGTCCGAATGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGCCGACTTGTACCTGAATACCGCCCTGCAAAGAGCCCAACTTTTCGCAGCGATGTGCATTCTAATTCCCACAGGAAAGTAGTGCAGATGAGGAAGCAGAAGGGAATGGGTTGA 726 0.4738 MEALGSVDDLLDFSSDIGEDDDDTPKKALPSLKPDCSDPPSLNPLALDDPNHSLSEEVAEEELEWLSNKDAFPAVETFVDLACIQPNILTHQTRAPMLENSTSSSNSNNSSNSITLLSGYNQMKFPVRARSKSRSKPRLGLSDTSNMQFPWKPPSNKTSKEQAKQTSTIGRECHHCGIDNTPQWRAGPNGPKTLCNACGVRFKSGRLVPEYRPAKSPTFRSDVHSNSHRKVVQMRKQKGMG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4171 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 230 - -
Mal1g4171 241 PANTHER GATA TRANSCRIPTION FACTOR 1 7 238 - -
Mal1g4171 241 MobiDBLite consensus disorder prediction 138 160 - -
Mal1g4171 241 SMART GATA_3 167 217 IPR000679 GO:0006355|GO:0043565
Mal1g4171 241 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Mal1g4171 241 MobiDBLite consensus disorder prediction 213 241 - -
Mal1g4171 241 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Mal1g4171 241 MobiDBLite consensus disorder prediction 1 56 - -
Mal1g4171 241 MobiDBLite consensus disorder prediction 125 160 - -
Mal1g4171 241 Gene3D - 168 239 IPR013088 GO:0006355|GO:0008270
Mal1g4171 241 CDD ZnF_GATA 172 220 IPR000679 GO:0006355|GO:0043565
Mal1g4171 241 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Mal1g4171 241 PANTHER GATA TRANSCRIPTION FACTOR 7 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4171 Mal-Chr1 92987976 92989209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4171 155 241 C2C2-Gata Transcription Factor Family AT3G24050 63.830 4.76e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal1g4171 GATA 7.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4171 - - mtr:MTR_5g007600 320.857