Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4154 ATGGATGGTTTTTCTAGCAGAACTCGTACCAAGAATGTTCCCTTGATCAGTTCATCAAAGCGGAGAAAGAGTGATGAAGATGATACGAGTTTGAACTTTGTTTCTGGTTCTAAGAAACTGAAGGTAAAAGAACCTTTTGTTGTTCCTGAGAATACTAAGGTCATTTCCATTGATGATGGGTTGGAGCAGTGTGATGAGAAGATGCTTGAGGATGAGTTTGATGTTAAAAAGAAAGTGAAGGAACATGGTTGGACTCTTGAAAACCCGATTACAGTGAATTCAGATGAATACGGTGAAAGTGATGAAGAAGATGATGATGATGTTAAAGAGGGAGCAAAAAGTGGAGGAAGTGGCGAGTCTGCTGATAAAGGTATATTTTTTGTTGATTTGGATGATTCTGATGAGAGTGATGATGAACACTCTTTTGATTCTGATGAAAGTGAAGAAAATGAGACTAGTGATGAGATTTCTGACAATGATGATGATAGCTGGGGAAAAAAATACTTTAATGTGGTGGAGGAGTTGGCGAGAAAGGCGAATGATAGACACAGTGGAATTTCTGAGATGAATAATGAGGAGGTGAAGGATAAGGGTCCTTCTGTAAATAATGATGAAGTGGAGCATTCAGATTATGGTAGTGTAGCAACCTCTACTACCTTTGAGAAGAATGGTTCTTTTGATTCAATGAAGGGTTCTTCTTCAAACAAGAATGAAACATCAAAGAAACAAAAAGCAAAAAGTGTGGAAAATGTCTCCGATGATGATGTATATGTTGCAAAAGCCAAATTCAAAGCCAAAGAAAGGGCTAAACCTAATGAAAGTGTGAATGTTGCTGGTTCTGATGAAGGAAAAGAGCATGTCAAAGGTTTAGATGTTGGGGGAGTTTCTTTGAAAATGATGGAGAACAAAGGAAAGGATTATAAAGATAGAGCTAACATCCGTATTGAGAAGAAGAAGGATTCTATTGATAACAATGGTTTGAATCAAAGGGTAAAAAGTACACATTTTATGCGGAAGGAGTTGCTCCTTGCTAAATGCTATTGGGATAGAAAGAATACCATGAAGAATGATTCAATTGTGTTTGAGTTCAATGAGGATGGCGTTGATCCACGAGATACACGGCCACCACTGGTTTCTGTGGAGACACCCCCATCGATATGGAGCCTTAAAAAGGTGGAAAAAGTGCAAAAGTCCAAGGAGGAGGAGGAGAATGAAGCGTTATGGAATGAATTGGATACAACCCTTAGAGAATCCGACGCCGAATCCATGATTGGAAATTTAGGGACAAATGAAGCTACAAAAATAAATAGTGGAAAGATTGGTGTATATTGCAAATTGTGTGGTGTGGTTATTACTGAGATCAAATATATCTCATCACTAGTGACTAATTTCTCTCGCAATGAAGGCACAGTTTGGGACCTAATTCCAGATTTGAAACAAACTTTATATCCTCATCAACAAGAAGGCGTTGAATTCATTTGGAAAAACTTCACAGGAAACGTGGCTGCATTGTTTCTCAAGGCATATTTGAATGTCTTTCCAAAATGCTTGCCGATTATTGTCGCTCCTGCTAGTTTACTACTAACTTGGGAAGATGAATTCAAGAAATGGGACATTGGAGTTCCATTTCACAATTTAAGCAATCCTGAGTTATCTGGTAAAGAGCATGCTGATGCGCATGCTATTGATGAAACACGGATGGTGAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAGTCGGTATGGAATAAAATGCAAAGATAAGAAAAAGCATGAAAGTGTGAAGAAGAGAAAAGGAAACTGTGATATGCGAAAGGTTCTACTTAAAGCTCCTGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCGAAGATTCAAATGCAGAAGCGAATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAACACCTTAAGCATAGTGAAGCGTTCTTTTCCTAACACGATACCGCCTGAGCTAAAAAGTTTTTGCCATAAGCAGGGGCATAAATCATCTAAAAAGCGGAGTTGTGAACTTGTTTCAGGCAATACAACAAGAGACCCTTCTGATGATAAGATCAAGAAGAACTTGTGTATTACTAATGGATCCCTTTGTTCATGTTCACAAAGGGACTATTTGGTGACTTTAAAGGCAGATGGTTTGCAGAACGAAATTCTGAAGAGCATTAAACGTTCTCAGAACACATTATTTAACTTTGAGCGTAAGATAGCATTGACATCCGTCTATCCATCTCTTTTCCTTGAATGCGCTCTTTCGGAAAAAGAAGAATCTGTTCTTGATAAGGATCAGCTGGAAAATCTTAGAATGAACCCACATGAAGGTGTCAAAACAAATTTTTTGTTCGAGTGTGATGCTTTTCACGAGAAAGTTCTTGTGTTCAGCCAATTCCACGCTCCTTTACAATTATCCCTAGTACATAGCTTCAACGATGCAAATTGCCAAGCAAAGGTTCTACTTGCAGCTACAAAAGCTTGTTCTGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGACGTAGTATGGAATCCTTCGGTCGAAAGACAGGCCATCAGCCGAACAGATAGGATTGGACAGAAGAGAGTGGTATACATATACCATCTGCTCGCTGAAGGGACTACGGAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGACCGGTTATCTGAGCTTGTTTTTTCAGAGAAAAATGCCGCCGATAATGATGATGAGTCCGAGAGCTGTGCTGTTAACTATGAAGATAGAGTTCTAGATCAGATGACTCACCATGAAAATCTCAAAGACATGTTTGTTAAGTGCGTGGTACTGAAGGAGCGAGATGTGGTCTGA 2919 0.3919 MDGFSSRTRTKNVPLISSSKRRKSDEDDTSLNFVSGSKKLKVKEPFVVPENTKVISIDDGLEQCDEKMLEDEFDVKKKVKEHGWTLENPITVNSDEYGESDEEDDDDVKEGAKSGGSGESADKGIFFVDLDDSDESDDEHSFDSDESEENETSDEISDNDDDSWGKKYFNVVEELARKANDRHSGISEMNNEEVKDKGPSVNNDEVEHSDYGSVATSTTFEKNGSFDSMKGSSSNKNETSKKQKAKSVENVSDDDVYVAKAKFKAKERAKPNESVNVAGSDEGKEHVKGLDVGGVSLKMMENKGKDYKDRANIRIEKKKDSIDNNGLNQRVKSTHFMRKELLLAKCYWDRKNTMKNDSIVFEFNEDGVDPRDTRPPLVSVETPPSIWSLKKVEKVQKSKEEEENEALWNELDTTLRESDAESMIGNLGTNEATKINSGKIGVYCKLCGVVITEIKYISSLVTNFSRNEGTVWDLIPDLKQTLYPHQQEGVEFIWKNFTGNVAALFLKAYLNVFPKCLPIIVAPASLLLTWEDEFKKWDIGVPFHNLSNPELSGKEHADAHAIDETRMVKLISWFKETSILGISYSRYGIKCKDKKKHESVKKRKGNCDMRKVLLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQMQKRIILSGTPFQNNFWELYNTLSIVKRSFPNTIPPELKSFCHKQGHKSSKKRSCELVSGNTTRDPSDDKIKKNLCITNGSLCSCSQRDYLVTLKADGLQNEILKSIKRSQNTLFNFERKIALTSVYPSLFLECALSEKEESVLDKDQLENLRMNPHEGVKTNFLFECDAFHEKVLVFSQFHAPLQLSLVHSFNDANCQAKVLLAATKACSEGISLVGASRVVLLDVVWNPSVERQAISRTDRIGQKRVVYIYHLLAEGTTEEEKYGKQAEKDRLSELVFSEKNAADNDDESESCAVNYEDRVLDQMTHHENLKDMFVKCVVLKERDVV* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4154 972 Gene3D - 827 968 IPR027417 -
Mal1g4154 972 SMART helicmild6 808 888 IPR001650 -
Mal1g4154 972 CDD SF2_C_SNF 779 899 - -
Mal1g4154 972 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 831 969 - -
Mal1g4154 972 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 830 - -
Mal1g4154 972 SMART ultradead3 478 684 IPR014001 -
Mal1g4154 972 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 831 969 IPR044567 GO:0080188
Mal1g4154 972 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 830 IPR044567 GO:0080188
Mal1g4154 972 MobiDBLite consensus disorder prediction 78 165 - -
Mal1g4154 972 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 759 934 IPR001650 -
Mal1g4154 972 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 519 672 IPR014001 -
Mal1g4154 972 Pfam Helicase conserved C-terminal domain 828 888 IPR001650 -
Mal1g4154 972 MobiDBLite consensus disorder prediction 206 236 - -
Mal1g4154 972 MobiDBLite consensus disorder prediction 178 204 - -
Mal1g4154 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 675 IPR027417 -
Mal1g4154 972 MobiDBLite consensus disorder prediction 131 158 - -
Mal1g4154 972 MobiDBLite consensus disorder prediction 178 251 - -
Mal1g4154 972 MobiDBLite consensus disorder prediction 1 17 - -
Mal1g4154 972 Pfam SNF2-related domain 519 671 IPR000330 GO:0005524|GO:0140658
Mal1g4154 972 Gene3D - 457 706 IPR038718 -
Mal1g4154 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 931 IPR027417 -
Mal1g4154 972 MobiDBLite consensus disorder prediction 1 34 - -
Mal1g4154 972 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4154 Mal-Chr1 92293649 92298418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4154 832 918 RAD5 or RAD16-like Gene Family AT5G43530 42.529 2.43e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g4154 SNF2_N 1.1e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4154 K10875 - gmx:100806733 587.415