Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4143 ATGGCGGCTGATCAGCTTCTTGAACACTTCAAATGTCCGATTTCACTTAAAATCATGTATGATCCTGTTATCCTCTCCTCCGGTCAAACCTTTGAACGTTCTTCAATCCAACAATGGCTTGACCAAGGTCACCGGAAATGTCCAATCACCAAATTACCCCTCCTTCATACTTACCTCATTCCCAATCACACCCTCCGTGCCATCATTGACAGTCTTGTCCCTTCTCCTCCGCCACCTCGGGATCAGATTCTTCCTCACCCTCCGTCTCCCCAAGCTCAAACCCAAACCCTAACTCTAACCGAAACCCTAATCTCTGCCCTAACCTCCTGTATGCCCACTAACTACAAACTTGACTCTCTCAACAAACTCACATTTCTCTCCCAACATGACCCCCTCTTCCGCCGCAACATCACCTACTTCTCTCTCACACCAGCTCTCTTTTCATGCATCGACGCCGATGACGAGGCTCTGCGCCGTAAATCTCTCTTGCTTCTCCTCAACCTCAGCCTTGAAGGTGAAAACACAGTTGGCCTAATGGCAGAAGGCATCCTCGACCCCCTTGTTTCCATCCTCTCCGGGGAAGTCTCCGATTGTCGCGCGGTGGCAGCAACCCTTATCACTAGCTTGGCTGTTCTCGAGCTCAACAGTGCAACAATCGGTGCACATCCACAGGCGATTGAAGCTTTGGTTTCTCTCATTCGCGATGGTGTTGTTAGAGAGAGAAAAGAAGCAGCTACTGCACTCTACGCTCTCTGTCGTCGTTCTCCATATAATCAACTAAAAGTTGTGGAATCTGGAGCTGTACCGGTTTTGCTTCGAAGGCTCGACGCCGGTCTCCAACGGTGCGTTGAGGTTATTGGTGTATTGGTTGAGTGTAAAGAAGCAATAGAAGAGATGGAAAAGTTTGGTGGGTGTGTTGGGGTTCTTGCTGGTGTTTTGAAGAATGGAAGTAGAATTGGTGTTGAGTATGCTCTTTTGGCTTTGAATCATATCTGTTGTAACAGTGAAGAAAGTGCTACTGAAGCTGTTCGTGCTGGCGGGTGTGTATATCCTTTTTAA 1059 0.4816 MAADQLLEHFKCPISLKIMYDPVILSSGQTFERSSIQQWLDQGHRKCPITKLPLLHTYLIPNHTLRAIIDSLVPSPPPPRDQILPHPPSPQAQTQTLTLTETLISALTSCMPTNYKLDSLNKLTFLSQHDPLFRRNITYFSLTPALFSCIDADDEALRRKSLLLLLNLSLEGENTVGLMAEGILDPLVSILSGEVSDCRAVAATLITSLAVLELNSATIGAHPQAIEALVSLIRDGVVRERKEAATALYALCRRSPYNQLKVVESGAVPVLLRRLDAGLQRCVEVIGVLVECKEAIEEMEKFGGCVGVLAGVLKNGSRIGVEYALLALNHICCNSEESATEAVRAGGCVYPF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4143 352 Gene3D - 82 350 IPR011989 -
Mal1g4143 352 SUPERFAMILY ARM repeat 98 342 IPR016024 -
Mal1g4143 352 CDD RING-Ubox_PUB 10 51 IPR045210 -
Mal1g4143 352 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Mal1g4143 352 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 346 - -
Mal1g4143 352 SUPERFAMILY RING/U-box 4 72 - -
Mal1g4143 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Mal1g4143 352 Pfam U-box domain 8 71 IPR003613 GO:0004842|GO:0016567
Mal1g4143 352 PANTHER U BOX DOMAIN-CONTAINING 2 346 - -
Mal1g4143 352 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4143 Mal-Chr1 91990636 91991694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4143 1 346 U-box Gene Family AT4G21350 49.856 5.50e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4143 - - mtr:MTR_2g011140 460.685