Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4142 ATGGCGGCTGATCAGCTTCTTGAACACTTCAAATGTCCGATTTCACTTAAAATCATGTCTGATCCTGTTATCCTCTCCTCCGGTCAAACCTTTGAACGTTCTTCAATCCAACAATGGCTTGACCAAGGTCACCGGAAATGTCCAATCACCAAATTACCCCTCCTCCATACTTACCTCATTCCCAATCACACCCTCCGTGCCATCATTGACAGTCTTGTCCCTTCTCCTCCGCCACCTCGGGATCAGATTCTTCCTCACCCTCCGTCTCCCCAAGCTCAAACCCAAACCCTAACTCTAACCGAAACCCTAATCTCTGCCCTAACCTCCTGTATGCCCACTAACTACAAACTTGACTCTATCAACAAACTCACATTTCTCTCCCAACATGACCCCCTCTTCCGCCGCAACATCACCTACTTCTCTCTCACACCAGCTCTCTTTTCATGCATCGACGCCGATGACGAGGCTCTGCGCCGTAAATCTCTCTTGCTTCTCCTCAACCTCAGCCTTGAATGTGAAAACAAAGTTGGCCTAATGGCAGAAGGCATCCTCGACCGCCTTGTTTCCATCCTCTCCGGGGAAGTCTCCGATTGTCGCGCGGTGGCAGCAACCCTTATCACTAGCTTGGCTGTTCTGGAGCTCAACAGTGCAACAATCGGTGCACATCCACAGGCGATTGAAGCTTTGGTTTCTCTCATTCGCGATGGTGTTGGTAGAGAGAGAAAAGAAGCAGCTACTGCACTCTACGCTCTCTGTCGTCGTTCTCCATATAATCAACTAAAAGCTGTGGAATCTGGAGCTGTACCGGTTTTGCTTCGAAGGCTCGACGCCGGTCTCCAACGGTGCGTTGAGGTTATTGGTGTATTGGCTGAGTGTAAAGAAGCAATAGAAGAGATGGAAAAGTTTGGTGGGTGTGTTGAGGTTCTTGCTGGTGTTTTGAAGAATGGAAGTAGAATTGGTGTTGAGTATGCTCTTTTGGCTTTGAATCATATCTGTTGTAACAGTGAAGAAAGTGCTACTGAAGCTGTTCGTGCTGGCGTTTTGGAAATTTGTTCTGCGTTGAAGCATCATGATAATGACAAAGTGAGGGCAAATGCTTCTTCTTTGTTCCTGGTTTTGCGTCCGAGGAAGCAGCAATGA 1140 0.4798 MAADQLLEHFKCPISLKIMSDPVILSSGQTFERSSIQQWLDQGHRKCPITKLPLLHTYLIPNHTLRAIIDSLVPSPPPPRDQILPHPPSPQAQTQTLTLTETLISALTSCMPTNYKLDSINKLTFLSQHDPLFRRNITYFSLTPALFSCIDADDEALRRKSLLLLLNLSLECENKVGLMAEGILDRLVSILSGEVSDCRAVAATLITSLAVLELNSATIGAHPQAIEALVSLIRDGVGRERKEAATALYALCRRSPYNQLKAVESGAVPVLLRRLDAGLQRCVEVIGVLAECKEAIEEMEKFGGCVEVLAGVLKNGSRIGVEYALLALNHICCNSEESATEAVRAGVLEICSALKHHDNDKVRANASSLFLVLRPRKQQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4142 379 SUPERFAMILY RING/U-box 4 72 - -
Mal1g4142 379 CDD RING-Ubox_PUB 10 51 IPR045210 -
Mal1g4142 379 Pfam U-box domain 8 71 IPR003613 GO:0004842|GO:0016567
Mal1g4142 379 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Mal1g4142 379 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Mal1g4142 379 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 375 - -
Mal1g4142 379 PANTHER U BOX DOMAIN-CONTAINING 2 375 - -
Mal1g4142 379 SUPERFAMILY ARM repeat 99 373 IPR016024 -
Mal1g4142 379 Gene3D - 97 370 IPR011989 -
Mal1g4142 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4142 Mal-Chr1 91960983 91962122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4142 1 373 U-box Gene Family AT4G21350 49.198 3.16e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4142 - - mtr:MTR_2g011140 505.753