Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4108 ATGTCTGTATTGGATCTCAATGTTGACATCATCCATGCTTATGATAAATCAACAAATGTTCAAAAGGGGTTACAACTTCTAACTTCTCCACCTCAAATATCAGATTCTAGAACCTCCAACTCTTCTGTTTGGAATCCTGCTGAAGAAGATTCCTCAAACAACTCCTCTCCTTTCACTTTTGACCTGTTGAAGGAAGAAAACACAAGACAAACAATCACAAGGACCCTTTTCCCTGTGAGTGCTGATAGAGGAGGTAGAGTATCTGACTCCATGACTCAAAGGATGAACTTTGATGATCAAAATGGACATAGAATCTTGCAGCAAAAGCAGCCTCAAGTTAGAAAAAGTAGAAGAGGACCAAGGTCTCGAAGCTCGCAGTACCGGGGTGTTACCTTCTACCGTAGAACTGGTAGATGGGAATCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCAAGAGCATATGATAAGGCTGCTGTTATGTTTAGGGGAGTTGATGCTGATATAAACTTTAGTTTGAGTGATTATGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAATTTGTCCTAAGACTTCGTAGACAAACCAATGGAAACTCAAAGAGAAGTTCAACATATAGAAGTGCACTACCTCTTCACAAATATGGTCAAGGAGATCCACAAATTATTAGACCATTTGTGGCCAAAACATTTTGTCATAAGTCACCTACCAAGCGTGATTATAAGGGAGAGATAATTGCAAATTCTAACAAAATAGGCACTTTACATAATCTTGATTTGAGTCTAGGGACTTCACCATCTTGGAAACAATTGAGTAACAATGATTCTGGAGTTGGATTTTCTTCTGGATGTACGACTTATATGATACCCAAAGAAAGGGGAACAATGCAAGAGAAGGGTTTGGTAAACATTAAAAAAGAAGTTCCATTGCAAGTATTTTCCAACTTGGCATGGAAGTTTGGCAGCAACATTGGATTGGGGTCGTTGCAATCAAATGCAGCAGCATCATCAGGATTCGTTTCATCACCTACATTTCTTCCAATCAGCTCACATAAAAATTGTCTGCCAACAATTTTGTCTTTGGCTCAACCACAATAA 1137 0.3949 MSVLDLNVDIIHAYDKSTNVQKGLQLLTSPPQISDSRTSNSSVWNPAEEDSSNNSSPFTFDLLKEENTRQTITRTLFPVSADRGGRVSDSMTQRMNFDDQNGHRILQQKQPQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDKAAVMFRGVDADINFSLSDYEEDLKQMRGLSKEEFVLRLRRQTNGNSKRSSTYRSALPLHKYGQGDPQIIRPFVAKTFCHKSPTKRDYKGEIIANSNKIGTLHNLDLSLGTSPSWKQLSNNDSGVGFSSGCTTYMIPKERGTMQEKGLVNIKKEVPLQVFSNLAWKFGSNIGLGSLQSNAAASSGFVSSPTFLPISSHKNCLPTILSLAQPQ* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4108 378 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 4 364 - -
Mal1g4108 378 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 364 - -
Mal1g4108 378 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Mal1g4108 378 Pfam AP2 domain 126 173 IPR001471 GO:0003700|GO:0006355
Mal1g4108 378 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700|GO:0006355
Mal1g4108 378 MobiDBLite consensus disorder prediction 86 109 - -
Mal1g4108 378 MobiDBLite consensus disorder prediction 28 58 - -
Mal1g4108 378 MobiDBLite consensus disorder prediction 83 127 - -
Mal1g4108 378 SMART rav1_2 126 188 IPR001471 GO:0003700|GO:0006355
Mal1g4108 378 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Mal1g4108 378 CDD AP2 126 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4108 Mal-Chr1 90039084 90042370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4108 3 229 AP2-EREBP Transcription Factor Family AT5G60120 45.693 5.48e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g4108 AP2 5.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4108 K09284 - gmx:100783626 400.979