Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4088 ATGAAGATGAACAGTTCAAATTCATTTGGGAGAAAGCGTGAAGAATGGTCATCTTCTCCACCACACATCATTTGTCAGAACCTTTCATCTTCTGACAAGATATGTAGTGACACTTTATTGAAACGCAGAAAGGTGAATAAAGCATTATCAATTTTTAGGGACTTATCTCATAATCTCTATTGTGAATACAAGTCAAACCAACCTTTAAAATTGAAAGCAAAATTAAAGGCTTTGGCAGAAGCTGCAAAGTTTATGAAAGAGAAGAATCAATGGGAAAACACTAGAAAGAGATTAGGGTATGTAGATGGAATTGAAGTTGGTGACAAATTTCAATATAGGGCTGAACTTATTGTCATTGGTCTCCATCAACAATACTGTTGTGGTATTGATTATTTGGGTAAAGGTGAGGATTCTTTGGCAACCAGCATTGTTGTAACTCATAGATATGCTAATGTTATGAAGTCTTCTGGCTATTTGGTTTATGAAGGTCATGGTGGTAACCTTAATGTAAGGCACGCTGTTGCGCCTCATGATCAGAAATTGGCGCGCGGAAATCTTGCTTTGTGGAATAGTATGAAAGCTGGGAGTCCTGTTAGGGTTATATTGCAGGTTTCTGAAAAATTTGAAGCGATGGAAGATTCGAGGAACAATGTTTCTAATTATTCATACATATATGATGGGTTGTATTTGGTGGGTAAGATGACTCGAGTAAGGGGACAATTTGGAAAACTTGTTTTCAAGTTTGTACTTAAGAAAATTTCAGACCAACCCGCCGGTGTTTCCCCCCTAGATGTTATCCCAAAGAATGTTTTCCCTCGAGATGTTGTTATGGAAACGAAAACTTCTGGTAAGAGACAAAAGTCTAAAGGTCTTGTTCCCTCGAAGGATGTTGTTCGAATCAATGATATTTCAGCGGGCAAAGAAAGGTTTCCTATTCGGGTGGTGACACCGATAAGTTGTGTGGAGATACCTAAACCCTTTAGTTACCTAGTCAATATGACTTATCCAAAGATGAATCGTTCGATACTAGGTGGTGGGTGTAATTGTGCAAATGCATGCGTTGATTGTCTTCAATGTCTTTGCAAAGCTAAGAATGGTGGGACATTAGCATATGATGGTAACAAAAAACTTGTTTCCCCTATGAAATCATCCTTTATATATGAGTGTGGCCCTTCTTGCATTTGTTCTTCGTCTTGCATCAACCGAGTGAGTCAACGCGGTATTCAGTTCCAGCTAGAAATATTCAAAACAAAATTGAAGGGGTGGGGTGTTAGAACGCGCTCTTTCATTCCATCTGGAAGCTTTGTGTGTGAGCTCATTGGAGAAGTTGTTCATCACAACTACCAAAAAGTTAGATCAAATCTACATGTTGAAGACTACATATTTAATATAGGTGCTTCTGGCAAGGGCTTCATTGATGCAACTAGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTCTCCTAACCTATGTGTGAAAGATGTTATGTATGATCACAATGATAAGAGTTTACCCCACAAAATGTTGTTTGCTATAAAGGACATACCCGCAGGTAGAGAGCTGAGTTATGATTACAATTGCTGCAAGGTGAATATCAAGGTTTTGAGTAATATTTGCTACTGTGGTTCATCTGAATGCAATGAGCAAATTTACATTTGA 1665 0.3802 MKMNSSNSFGRKREEWSSSPPHIICQNLSSSDKICSDTLLKRRKVNKALSIFRDLSHNLYCEYKSNQPLKLKAKLKALAEAAKFMKEKNQWENTRKRLGYVDGIEVGDKFQYRAELIVIGLHQQYCCGIDYLGKGEDSLATSIVVTHRYANVMKSSGYLVYEGHGGNLNVRHAVAPHDQKLARGNLALWNSMKAGSPVRVILQVSEKFEAMEDSRNNVSNYSYIYDGLYLVGKMTRVRGQFGKLVFKFVLKKISDQPAGVSPLDVIPKNVFPRDVVMETKTSGKRQKSKGLVPSKDVVRINDISAGKERFPIRVVTPISCVEIPKPFSYLVNMTYPKMNRSILGGGCNCANACVDCLQCLCKAKNGGTLAYDGNKKLVSPMKSSFIYECGPSCICSSSCINRVSQRGIQFQLEIFKTKLKGWGVRTRSFIPSGSFVCELIGEVVHHNYQKVRSNLHVEDYIFNIGASGKGFIDATRHGNIGRFINHSCSPNLCVKDVMYDHNDKSLPHKMLFAIKDIPAGRELSYDYNCCKVNIKVLSNICYCGSSECNEQIYI* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4088 554 ProSiteProfiles YDG domain profile. 99 252 IPR003105 -
Mal1g4088 554 SMART G9a_1 94 256 IPR003105 -
Mal1g4088 554 ProSiteProfiles Pre-SET domain profile. 345 407 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal1g4088 554 SUPERFAMILY SET domain 290 543 IPR046341 -
Mal1g4088 554 SMART set_7 410 534 IPR001214 GO:0005515
Mal1g4088 554 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 550 - -
Mal1g4088 554 SUPERFAMILY PUA domain-like 81 263 IPR015947 -
Mal1g4088 554 SMART preset_2 300 394 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal1g4088 554 Pfam SAD/SRA domain 98 256 IPR003105 -
Mal1g4088 554 ProSiteProfiles SET domain profile. 410 528 IPR001214 GO:0005515
Mal1g4088 554 Pfam Pre-SET motif 303 402 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal1g4088 554 Gene3D - 80 264 IPR036987 -
Mal1g4088 554 Gene3D SET domain 276 536 IPR046341 -
Mal1g4088 554 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 14 550 - -
Mal1g4088 554 Pfam SET domain 421 528 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4088 Mal-Chr1 89191378 89193130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4088 77 548 Su(var)3-9 homologs AT1G73100 33.463 5.56e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal1g4088 SAD_SRA 3.6e-36 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4088 - K11420 gmx:100807574 578.556