Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4064 ATGGGCGGTTGTTGCTGTTGTGCTTCCAAGGAGACTGTATTAAGCGCTCCACCTGCTTACTATTATAACATTACATCCTCGCTTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGACAATCACGGAACCTCACCTAAGTCTGAAGAACTGAAGGAATCAGAATGCAAAGGTCAGACTGATTCAGAACAGGACTCAGCAAAGGATTCTGAAATTGAACTTTCAAAGTTGGGAGAACCTATAAATTTAGTAGAAGAAGAGGATACATGCCCGATATGTTCAGAAGAATATGATGCTGAAAATCCAAAACTCACCACTCAATGCGGACATGATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCCGTTTGTGATCAGGCTACAGTTTTCAGCACTCCCATTGAATAG 429 0.4126 MGGCCCCASKETVLSAPPAYYYNITSSLSTNSNSVQEPSGDNHGTSPKSEELKESECKGQTDSEQDSAKDSEIELSKLGEPINLVEEEDTCPICSEEYDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQATVFSTPIE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4064 142 MobiDBLite consensus disorder prediction 44 81 - -
Mal1g4064 142 SUPERFAMILY RING/U-box 85 138 - -
Mal1g4064 142 Pfam RING-H2 zinc finger domain 86 131 IPR024766 GO:0008270
Mal1g4064 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 139 IPR013083 -
Mal1g4064 142 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 23 142 - -
Mal1g4064 142 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 23 - -
Mal1g4064 142 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 23 142 - -
Mal1g4064 142 ProSiteProfiles Zinc finger RING-type profile. 91 132 IPR001841 -
Mal1g4064 142 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 23 - -
Mal1g4064 142 SMART ring_2 91 131 IPR001841 -
Mal1g4064 142 MobiDBLite consensus disorder prediction 30 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4064 Mal-Chr1 87775030 87775505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4064 16 137 C3H Transcription Factor Family AT4G00335 44.715 5.14e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4064 - - gmx:100816369 188.734