Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4040 ATGTTAGCGATATCCCCTCCCGTGTTTTCAACAATTGGATGGCCCTTTGAGGAGTCTTTAAGCCATAACCAGCACCAAAATCACTTCTACATAGGCACTAGTGATCAGTTATTTAATTTTCATGATCAAGTTGAGGCAGAAATTAATTCTGCAGATCCCTCACAATCCACAAGCAGTGACCTTAGCATGGTCAAGAAGCTTGTTCATAATGCAAGTGAACGCGATCGCCGCAAGAAGATCAATAATTTGTATTCTTCACTTCGTTCACTTCTTCCTGATTCTGACCAAATGAAGAAATTGAGCATTCCAGCAACAATTTCAAGAGTCCTAAAATACATACCGGAATTACAGAAACAGGTGGAAAGACTAATAAAGAGAAAAGAAGAGATCTTATTGAGACTTTCTCCACAAGTAGATGAAGTTATTATAAGCAAAGAATCTCAAAAGAAGAAACATAGTTACAACTCTGGTTTTGTAGTTTCAACTAGTAGGCTCAATGATAGTGAAATTTCAATTCAGATTTCATGTTACACTGTCCACAAGATTCCACTTTCTGAGATCTTGATGTGTTTGGAAAATGATGGCCTTTTGCTGCTTAATGCTTCTTCATCTCAGACCTTTGGAGGGAGAGTCTTCTATAATTTGCATTTCCAGGTTGATAAAATACACAGATTCGAATCCGATGTTCTAAATGAAAAGCTCTTATCAATAATGCAAAAGGAAGAGGGTTTTCAAAACAATAACAACTAG 750 0.368 MLAISPPVFSTIGWPFEESLSHNQHQNHFYIGTSDQLFNFHDQVEAEINSADPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPDSDQMKKLSIPATISRVLKYIPELQKQVERLIKRKEEILLRLSPQVDEVIISKESQKKKHSYNSGFVVSTSRLNDSEISIQISCYTVHKIPLSEILMCLENDGLLLLNASSSQTFGGRVFYNLHFQVDKIHRFESDVLNEKLLSIMQKEEGFQNNNN* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4040 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 240 IPR015660 GO:0003700|GO:0006357
Mal1g4040 249 SMART finulus 70 122 IPR011598 GO:0046983
Mal1g4040 249 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 240 - -
Mal1g4040 249 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Mal1g4040 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Mal1g4040 249 CDD bHLH_AtORG2_like 65 140 - -
Mal1g4040 249 Coils Coil 113 133 - -
Mal1g4040 249 Gene3D - 56 152 IPR036638 GO:0046983
Mal1g4040 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 134 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4040 Mal-Chr1 86463364 86470863 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4040 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.023 8.77e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g4040 HLH 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4040 - - mtr:MTR_1g048750 375.17