Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4017 ATGGAACAAACCTTTGAACCCACCTTCACTTTTTGGTCCTCAAACATCCTAGAAATTCAAAATTCAATTTCTCAAAGCAACAACATGACACAAACCTCATTCTCCAAACCTCCAAGATCATCCTCAAACCTAAGCAACCGCAAACCCTCCTTAAACATCACAATCCCTTCCATAACCAAACCTCTCCCACATCAAAACATTGAAAAAGGTGAAAACATCAACACCAAAGAGGATAACAAGCACTATAGGGGTGTTAGAAGAAGACCATGGGGAAAATTTGCAGCAGAAATTCGTGACCCTAATAGAAAAGGGTCAAGGGTGTGGCTTGGAACCTTTGACACAGCTATAGAAGCTGCAAAAGCTTATGATAAAGCTGCTTTCCAGATGAGAGGAAGTAAGGCCATTTTGAACTTCCCTCTAGATGTTGCTACTGACTCTGTAGAATCATCACTTTCTAAATGCATCAAAGTTGGTGAGAAAAGGCAAAGGGAAGAAGAAAACTGTGTTGAGATCAATAATAATACTAAGCAAGTTAAGAAAGAAGAAGGGGTTTCAGCAGCAGTAACAATTTGTCCTTTAACTCCTTCATGTTGGAAAGGCTTTTGGGATACTGATGTCATGGGAACTATCTTTAGTGTACCTCCTTTGTCACCCTTATCTCCACTCATGGGATTTTGA 678 0.3997 MEQTFEPTFTFWSSNILEIQNSISQSNNMTQTSFSKPPRSSSNLSNRKPSLNITIPSITKPLPHQNIEKGENINTKEDNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFQMRGSKAILNFPLDVATDSVESSLSKCIKVGEKRQREEENCVEINNNTKQVKKEEGVSAAVTICPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMGF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4017 225 MobiDBLite consensus disorder prediction 70 85 - -
Mal1g4017 225 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Mal1g4017 225 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Mal1g4017 225 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Mal1g4017 225 MobiDBLite consensus disorder prediction 27 85 - -
Mal1g4017 225 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Mal1g4017 225 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Mal1g4017 225 SUPERFAMILY DNA-binding domain 81 141 IPR016177 GO:0003677
Mal1g4017 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 214 - -
Mal1g4017 225 MobiDBLite consensus disorder prediction 27 61 - -
Mal1g4017 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 25 214 - -
Mal1g4017 225 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Mal1g4017 225 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Mal1g4017 225 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4017 Mal-Chr1 85182723 85183400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4017 40 224 AP2-EREBP Transcription Factor Family AT5G51190 52.910 1.62e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g4017 AP2 5.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4017 K09286 - gmx:100795866 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3828 3 116104317 116104742 Mal1g4017 1 85182723 85183400 PCT