Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4004 ATGACAACAGCAAAAGAAACTTCAAACTTAGATCTCATACGCCACCATCTCTTAGGTGACAACATCTCTGACTCTTTTCTCCATCCTGTTAAACTTGAAAACCCTTCACAAGAATTTGAATTTGATTTCTCTTCATATATTTCAGACAATAACAACACTTTCTTCACTTTCCTTGAAAATTATGATTTGATAGCTGACATGGAATTCTTTACTTCTCCAAAGGAAACAACCCCTTCAAAGGAAATCAAGAAAACCAATTCACGTGAAGAACCAAGTACTATGGTGTCATCAAAGAAGATTAAGAAAGAAGAAGAAGTTGTTGATGAGACAAGGAGATACAGAGGAGTAAGAAGAAGGCCATGGGGGAAATTTGCAGCTGAGATACGTGATCCATCAAGAAAAGGAAGTAGGGTTTGGTTAGGTACATTTGATTGTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGAGTGTGTGATCCTAAGCCAAATAGTTGTGGCAGGAAAAGGAGAAGAGAAAGTGAAATTGAAGGTACAAAAAGTTTAAGTTCTTCAAGTTCATGA 615 0.3691 MTTAKETSNLDLIRHHLLGDNISDSFLHPVKLENPSQEFEFDFSSYISDNNNTFFTFLENYDLIADMEFFTSPKETTPSKEIKKTNSREEPSTMVSSKKIKKEEEVVDETRRYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDCEIDAAKAYDSAAFRMRGQKAILNFPLEAGVCDPKPNSCGRKRRRESEIEGTKSLSSSSS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4004 204 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Mal1g4004 204 CDD AP2 120 170 IPR001471 GO:0003700|GO:0006355
Mal1g4004 204 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Mal1g4004 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 192 - -
Mal1g4004 204 SUPERFAMILY DNA-binding domain 112 172 IPR016177 GO:0003677
Mal1g4004 204 MobiDBLite consensus disorder prediction 77 99 - -
Mal1g4004 204 MobiDBLite consensus disorder prediction 75 99 - -
Mal1g4004 204 MobiDBLite consensus disorder prediction 178 204 - -
Mal1g4004 204 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Mal1g4004 204 PRINTS Ethylene responsive element binding protein signature 152 172 IPR001471 GO:0003700|GO:0006355
Mal1g4004 204 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Mal1g4004 204 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Mal1g4004 204 MobiDBLite consensus disorder prediction 181 195 - -
Mal1g4004 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4004 Mal-Chr1 83836085 83836699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4004 1 189 AP2-EREBP Transcription Factor Family AT5G07580 43.216 1.64e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal1g4004 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4004 - - ccaj:109813158 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3790 3 115499471 115502656 Mal1g4004 1 83836085 83836699 PCT