Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3938 ATGGCTATCCGAGCTACCTTCTCCTTTTCCGGCTATGTCGCCCAAAACCTAGTTTCTTCCACCGGCGTTCGAGTCACCAATCCTCGCGGTGTCCAGGAATGCTGCATCCTCTCTCGTTTCTTTGGATCCAACCCAAAACCCGATCTGGATCGTTCCCGCGGCGGCATAGGTGAGAATTTCAGTAAGCCAAAAAAGTCTGCCTATTCTACCCTCGCAGGAGATCTTCTCACCGAAGGTTTCATTTGGATGATGAAGTCAGCTTCTGTTATTCCTGGGTCAACATCTGGTATTATGGGTATTTCACCATTCAAACCCTCTTCGATTATACCTTTTTTACAGGTTTCAAAGTGGCTTCCTTGTAATGAGTCTGTGATTAATCCTACAACGTGGGAAATTGCTGTTTCTAAGCCACCAGAATCGCGTTTGAATTTGAATCAACAGGTGAGGACTAATAGTTGGATTTCGAGATATTCGAAAGATGCTAAAGCTGTATTCACTGCTTTCACCGTTAGTTTACTTTATAAATCATCTTTGGCTGAACCTAAATCTATTCCGTCTTCATCTATGTACCCAACTCTTGAGGTTGGTGATCGCGTTCTAACAGAAAAGTTTTCTTTCCTCTTTAGAAAGCCTCATGTTTCTGATATTGTTATTTTCAAACCACCACAATGTTTGAAGCAATTTGGTTATAGTTCATCTGATGTATTTATAAAAAGGATTGTGGCTAAGGCTGGTGATGTTGTCCAAGTTCACGGTGGGAAACTACTCGTGAATGGTCTTGCTGAACAAGAGGAATTTGTTTTAGAGCCTCTTGCTTACGAGTTGGCTCCAATGGTTGTGCCGAATGGACATGTGTTTGTAATGGGAGACAATCGTAATCAGAGTTTTGATTCTCATAATTGGGGTCCTCTCCCGATCAAGAACATTGTTGGTAGGTCGATGTTTCGTTACTGGCCTCCATCCAAAGAAGATCAGACTGGCAATTCATAA 990 0.4242 MAIRATFSFSGYVAQNLVSSTGVRVTNPRGVQECCILSRFFGSNPKPDLDRSRGGIGENFSKPKKSAYSTLAGDLLTEGFIWMMKSASVIPGSTSGIMGISPFKPSSIIPFLQVSKWLPCNESVINPTTWEIAVSKPPESRLNLNQQVRTNSWISRYSKDAKAVFTAFTVSLLYKSSLAEPKSIPSSSMYPTLEVGDRVLTEKFSFLFRKPHVSDIVIFKPPQCLKQFGYSSSDVFIKRIVAKAGDVVQVHGGKLLVNGLAEQEEFVLEPLAYELAPMVVPNGHVFVMGDNRNQSFDSHNWGPLPIKNIVGRSMFRYWPPSKEDQTGNS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3938 329 PRINTS Bacterial leader peptidase 1 (S26A) family signature 236 248 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g3938 329 PRINTS Bacterial leader peptidase 1 (S26A) family signature 280 299 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g3938 329 PRINTS Bacterial leader peptidase 1 (S26A) family signature 177 193 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g3938 329 ProSitePatterns Signal peptidases I signature 3. 285 298 IPR019758 GO:0004252|GO:0016021
Mal1g3938 329 Pfam Signal peptidase, peptidase S26 161 318 IPR019533 GO:0004252|GO:0006465
Mal1g3938 329 CDD S26_SPase_I 180 312 IPR019533 GO:0004252|GO:0006465
Mal1g3938 329 ProSitePatterns Signal peptidases I serine active site. 186 193 IPR019756 GO:0004252|GO:0016021
Mal1g3938 329 Gene3D Umud Fragment, subunit A 175 328 - -
Mal1g3938 329 SUPERFAMILY LexA/Signal peptidase 178 323 IPR036286 -
Mal1g3938 329 PANTHER SIGNAL PEPTIDASE I 1 326 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g3938 329 TIGRFAM sigpep_I_bact: signal peptidase I 163 319 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g3938 329 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3938 Mal-Chr1 80958065 80959054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3938 189 319 MADS-box Gene Family AT1G29960 33.083 3.51e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3938 K03100 - gmx:100817525 417.927