Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g3931 | ATGGTGGCAGGGGTTGTCAGTAACACGTCTACCGCCACCATAGGGGGGAACGGGTTCACACGGGACAAAGAGAGATGTGATGTGGATGATCAGAAATGTTGTGAACATTTTCGCGAGCTGGACCGAATCACCACATCCTATTTTTTCACTAACTTTCCGGAAGAAGCTTCCATCTCGGAACTGCGGAAAAAGTTTGCAAGGTTTGGTTCTGTATGGGAAGTTTTTGTGCCAAGGAAGATGGATCGTTGGGGCAAGAGATTTGGTTTCGTTAAATTCAAACAGGCGGAGGATGAGGAAGTTTTGGGAAAGCGTCTTGCGGAGGTCTGGGTTCGTGACTTGAAGATCAAAGTAAATCGAGCTAGATTTGAGAGGGAAGAGAGGAATCAGAAAGCAGACAAGAAGCCAGTGCCAAACAGTGAATGTAGAAAGGATTTGGATGATGATACTGCGTCGATGAATCATTGCGATGTTGCCTGGATTCTTGTTTCGACGGATCGTATGGGGTTGATAAACGAGCAGTTTCGGTTTTCTGTCATTGGTGTTGGGTATAATGTGTGGGTGATGGAAGAATGTGGTGGTGATAGGGGGTGGATTCTGGAAGCTTCTAGTAAAGTTTGA | 618 | 0.4595 | MVAGVVSNTSTATIGGNGFTRDKERCDVDDQKCCEHFRELDRITTSYFFTNFPEEASISELRKKFARFGSVWEVFVPRKMDRWGKRFGFVKFKQAEDEEVLGKRLAEVWVRDLKIKVNRARFEREERNQKADKKPVPNSECRKDLDDDTASMNHCDVAWILVSTDRMGLINEQFRFSVIGVGYNVWVMEECGGDRGWILEASSKV* | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g3931 | 205 | Gene3D | - | 44 | 132 | IPR012677 | - | |
| Mal1g3931 | 205 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 97 | IPR000504 | GO:0003723 | |
| Mal1g3931 | 205 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 122 | IPR000504 | GO:0003723 | |
| Mal1g3931 | 205 | MobiDBLite | consensus disorder prediction | 126 | 145 | - | - | |
| Mal1g3931 | 205 | CDD | RRM_SF | 48 | 118 | - | - | |
| Mal1g3931 | 205 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 44 | 131 | - | - | |
| Mal1g3931 | 205 | PANTHER | RNA RECOGNITION MOTIF | 44 | 131 | - | - | |
| Mal1g3931 | 205 | SUPERFAMILY | RNA-binding domain, RBD | 38 | 125 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g3931 | Mal-Chr1 | 80707554 | 80708632 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g3931 | 4 | 134 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.718 | 8.71e-06 | 43.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g3931 | - | K12900 | mtr:MTR_7g108440 | 99.3673 |