Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3900 ATGATCGGACAAAGCATGTGGAAGCTTGATGTTTATATATATGATTATTTGGTCAAGAAAAAGTTGCACAATACTGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCCCCTGGATGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGAATATTTTTATTGCGAGGATAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCCAAAGAACAACAATTGCAAATGCAGCAGTTGCAGTTAATGCGTCATGCTCAGTTGCAAATAAGAGATGGAACTCCTATTGGAACAGAAGGAGTGCTAGGGCAATCTACTGCCACTGCTTTGGCTACAAAAATGTATGAGGATCGCATTAAGAACTCTAACCCTATGGATATAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTCAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGCAAGTGTGACAGCAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAACCCCTGACATCAAAAGCGAAGTCATCATGGGAAACATGCAGAGATCCTTACCTGTGGATCCTTCTTCAATTTATGGGCAGGGAGGATTGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTCACGTTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGAGTTTTGGAGCTCAAGCTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGGTCCAGCTTATGCCACAACAACAACAACAACAGCTCCTTGCACAGGTACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGACTAAGGGGATTAGCTAGGGGAGCTTTGAATCAGATCAACATGCCTCAAATGCAACAATCCATCTCCCAGCAACAACAGCATCCTTTGCATTCACAGCAACTGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCGGGAGCTGCCAATAGTACTAGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGAGTTTCTGTGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGGCATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCTGAGCATGCAACAGATTCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTTTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGTTATTATTACTGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCCTTGCAGGCATATAGCGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAATAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGTACTCGTGTCTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCCGGCAATGTTGTGTCTCTCTTTGATGTTGAGACTGACAGACAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACGAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTTTGGTCACTTGCCTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCAACCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGCCGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTAACAGGGATGGTTGCTTCTGCTAGTCATGACAAGTCAGTAAAGATATGGAAATAA 2259 0.4298 MIGQSMWKLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGCFLFEWWSVFWNIFIARINEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQIRDGTPIGTEGVLGQSTATALATKMYEDRIKNSNPMDIETSQPLLDARMALFKSTNHPGQMVQGNSASVTAALQQMQARTQQTPDIKSEVIMGNMQRSLPVDPSSIYGQGGLQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPSFGAQAQKPLLQSANQFQVQLMPQQQQQQLLAQVHAQGNIGNSQVYGDMDPQRLRGLARGALNQINMPQMQQSISQQQQHPLHSQQLVQNNRKRKGPTSSGAANSTSTGNTLGPSNSQPSTPSTHTPGDGVSVAGNLQNVAGVSKGLMMYGTEGAGGLASSTNQLLQDGMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDSSKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVASLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFHSCVFHPSYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3900 752 Pfam WD domain, G-beta repeat 634 669 IPR001680 GO:0005515
Mal1g3900 752 Pfam WD domain, G-beta repeat 508 545 IPR001680 GO:0005515
Mal1g3900 752 Pfam WD domain, G-beta repeat 719 752 IPR001680 GO:0005515
Mal1g3900 752 Pfam WD domain, G-beta repeat 553 589 IPR001680 GO:0005515
Mal1g3900 752 Pfam WD domain, G-beta repeat 476 503 IPR001680 GO:0005515
Mal1g3900 752 MobiDBLite consensus disorder prediction 317 382 - -
Mal1g3900 752 SUPERFAMILY WD40 repeat-like 465 752 IPR036322 GO:0005515
Mal1g3900 752 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 752 IPR044716 GO:0003714
Mal1g3900 752 PRINTS G protein beta WD-40 repeat signature 739 752 IPR020472 -
Mal1g3900 752 PRINTS G protein beta WD-40 repeat signature 490 504 IPR020472 -
Mal1g3900 752 PRINTS G protein beta WD-40 repeat signature 532 546 IPR020472 -
Mal1g3900 752 SMART WD40_4 506 545 IPR001680 GO:0005515
Mal1g3900 752 SMART WD40_4 549 589 IPR001680 GO:0005515
Mal1g3900 752 SMART WD40_4 713 752 IPR001680 GO:0005515
Mal1g3900 752 SMART WD40_4 672 711 IPR001680 GO:0005515
Mal1g3900 752 SMART WD40_4 592 628 IPR001680 GO:0005515
Mal1g3900 752 SMART WD40_4 631 669 IPR001680 GO:0005515
Mal1g3900 752 SMART WD40_4 464 503 IPR001680 GO:0005515
Mal1g3900 752 Gene3D - 606 752 IPR015943 GO:0005515
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 512 IPR001680 GO:0005515
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 513 545 - -
Mal1g3900 752 Coils Coil 76 96 - -
Mal1g3900 752 Pfam LisH 9 33 IPR006594 GO:0005515
Mal1g3900 752 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 9 752 - -
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 513 545 IPR001680 GO:0005515
Mal1g3900 752 CDD WD40 467 752 - -
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 598 IPR001680 GO:0005515
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 720 752 - -
Mal1g3900 752 ProSitePatterns Trp-Asp (WD) repeats signature. 490 504 IPR019775 -
Mal1g3900 752 Gene3D - 446 605 IPR015943 GO:0005515
Mal1g3900 752 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 37 IPR006594 GO:0005515
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 678 IPR001680 GO:0005515
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 720 752 IPR001680 GO:0005515
Mal1g3900 752 MobiDBLite consensus disorder prediction 444 463 - -
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 506 - -
Mal1g3900 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 556 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3900 Mal-Chr1 79024023 79039655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3900 489 670 U-box Gene Family AT2G33340 28.042 1.68e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mal1g3900 WD40 0.0082 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3900 - - gmx:100797756 1232.24