Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3887 ATGTTCATTAAGCAGGTTGTGATTGAAGGTTTCAAGAGTTACCGAGAGCAAATTGCCACAGAGGATTTCAGTCCTAAAGTTAATTGTGTTGTTGGTGCTAATGGCTCTGGTAAAACAAATTTTTTCCATGCCATTCGTTTTGTATTAAGTGATCTCTTTCAAAACCTATGCAGTGAGGATAGGCATGCACTACTCCATGAAGGGGCTGGACACCCGGTTATATCTGCATTTGTGGAGATTGTGTTTGATAATTCAGACAATCGTATCCCGGTTGACAAGGAGGAAGTGCGTTTACGCCGGACGATTGGTTTGAAAAAGGATGAATATTTTCTAGATGGAAAACACATCACGAAAACTGAAGTGATGAATTTACTAGAAAGTGCTGGGTTCTCTCGCTCAAATCCATATTATGTTGTACAACAAGGAAAGATAGCATCCTTAACCTTGATGAAAGACTCTGAGCGATTGGATTTACTGAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGTCGTGAAAGTTTGAAAATAATGCAGGATACAGGTAACAAAAGAAAACAAATTATCCAAGTTGTACAGTATTTAGACGAGAGGTTGAAGGAACTAGATGAGGAGAAAGAGGAACTTAGAAAATATCAGCAACTTGACAAGCAGAGAAAATCCTTCGAATATGCCATATTTAGCAAAGAAGTTCAAGATGCTCAGCTAAAGCTTGCAGAGATAGAACAAGCTCGGACCAAGGTCTCTGAAATATCAGCAAAGAAGTATAATGAGGTTCTTAATGCACAAGAGAAGTCCAAAGGTTTGGAGAATAACTTGAAAGATATAACTAAGGAACATCAAAACCTTATCAAGGAAAAAGAAGTTATTGAAAAGCGACGAACAACAGCATTAAAGAAGCACACAGAGCTTGAGCTTGATGTCAAAGACTTACAAGAGAAGATCTCTGGAAATATCCATGCCAAAGAAGATGCTGCAAAACAATTGGAGATACTTGAGAATAAAATACAAGGCTCGATGGATGAACTGGACAACATTAGTCCTTTATATGACAATCTAGTTCAGAAAGAAAAAGACATTACCAAGGGAATAATGAAGCGCGAGAAGGAACTCAGTATACTTTATCAAAAGCAAGGACGCGCAACACAATTTTCAAGTAAAGCTGCTCGTGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAACTGGTGCTCTCTTTAAACACAACGCAGGAGAAAAAGCTGATGGAAGAAATTCAACGACTTAATGATGAAATGCATGGCTGTGATGGGAATATTCAGAGCTGTAAAACAAATATTACTACTTTGGAATCTCAAATTGCTAAGTCACGCCAAGTGTTTAGTGATTATAAAGTAAAAAGAGACAGCCTTCATGATAAGAGAAATGCAGTAGCCTCTTCCCAACAAACAAGATATCTAACACCTATTATGGGGGCAGGTTGGCATTATTATACACCACCTTGTTTGACACTGTACTATAATGTGCAGGATGTTAGAAGAGGGTTGAATTCAGTTCGGAAGATCTGCAAAACTCAAAACATTTCTGGAGTTCACGGTCCAATTATTGAGTTGCTGAACTGCGAGGAAAGATTTTTCACCGCAGTTGAAGTGACTGCAGGAAACAGCTTATTTCATGTGGTTGTTGAGAATGATGACAAGTCAACCGAGATAATTAAACATCTTAATCGACAAAAAGGTGGACGTGTTACATTTATTCCACTTAACAGAGTAAATGCTCCACGCGTCACTTATCCACAGAGTTTCGATGTCATACCTCTTTTACAGAAATTGAATTTTAAACATGACTACACTCCAGCATTCAGTCAGGTATTTGCTAGAACAGTTATCTGCAAGAATCTAGATGTGGCTTCAAAGGTAGCTCGTACCAATGGTTTGGACTGCATAACACTGGAAGGTGATCAAGTAAGCAAAAAAGGTAGTATGACCGGAGGATTTTATGATCACAGACGATCAAGATTGAAGTTTATGAATACCATTAAGCAGAATGCTGAAAGTATTCACATTAAAGAGGAGGAATTGGAGAAAATAGACCAAAAGATTAATGAACTTGTTACCGAGCAGCAAAAGGTTGATGCTCAATGCGCTCATAACAAATCAGAGATAGAAGAGCTTAAGCGGGACTTGCTAATTCTAATAAACAGAAGCCTTTATTTTCTAAAGCACTTGAAAAGAAGGAAATCACATGTTGATGTCCAGAATCAGATTGAACAGCTTAAGGGTAGCATTGCTATGAAAAAAGCTGAGATGGGCATAGAGCTCATTGATCATTTAACACCAGAGGAAAAAAAGCTTTTGTCTGATTTGAACCCTGAAATCAAAGACCTTAAAGAAAAGCTTGTTGCTTGCAAGACTGATCGCATTGAGAGTGAAGCACGGAAAGCGGAGCTGGAAACTAATCTAACCACTAATCTCAGGAGAAGAAAACAAGAGCTTGAGGCTGTGATATCATCTGTTGATGCCGACTCTATGGTTGTTGATGCCGAATTCAAGAGGCAGGAACTTAGTGATGCTAAAATGTTGCTTGATGATGCCTCAGATCAGCTTAAAAGAGTTTCTGAAAGTATAAATAATCGAAACAGACAAATTGCAAAGATCAAAGATGAACTTAATAAATTGAAGTCTTTGAAGGACGAGTATAATAGAAAACTTGAGGAAGAAGCTAAAGAATTAGATCAATTGCTGGGTAAAAAAAATGAATTTTCTGCTAAAGAAGAAGAGTATACCAAGAAAATAAAGGAACTTGGCCCATTGACATCGGATGCTTTTGAGACGTACAAACGAAGGAATATTAAAGAGTTGCAAAAAATGCTGCACAAGTGCAATGATCAGTTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTAGATCAGTACATCAATTTTACAGAACAGCGAGAAGAACTTCAGAAAAGACAAGCTGAACTTGATGCAGGAGATGAGGTATACTTTCATTTCATAAGCATAAACTTTACACTAATATCAAGTCTAGATCAACGGAAGGATGAATCAATAGAGCGCACTTTCAAAGGTGTTGCTAGGCATTTCCGAGAAGTATTCTCTGAACTTGTACAGGAGGGCAGTGGCCATCTGGTTATGATGAAGAAGGATGGTGATCATGATGATGATGATCAAGACGAGGATGGTCCTCGAGAAGCAAATCCAGAGGGGAGAGTAGAAAAGTACATTGGAGTGAAAGTGAAGGTCTCTTTTACTAAACAAGGGGAAACACAGTCCATGAAGCAGTTGTCGGGGGGTCAAAAAACTGTTGTTGCTCTTACACTTATCTTTGCCATACAGAGATGTGATCCGGCACCCTTTTATCTATTTGATGAAATTGATGCAGCATTGGATCCACTGTACAGAACTGCTGTTGGAAATATGATCCGGCGCCTGGCAGACATAGCAAACACTCAATTTATCACGACAACATTCCGTCCAGAGTTAGTGAAAGTTGCCGACAAGATATATGGAGTGACACATAAAAACAGGGTCAGCCGTGTTAATGTTATATCCGAGAATGATGCTCTAGAATTCATTAATCAGGATCAGACACAAAATGCTGAATAA 3612 0.3854 MFIKQVVIEGFKSYREQIATEDFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLCSEDRHALLHEGAGHPVISAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSFEYAIFSKEVQDAQLKLAEIEQARTKVSEISAKKYNEVLNAQEKSKGLENNLKDITKEHQNLIKEKEVIEKRRTTALKKHTELELDVKDLQEKISGNIHAKEDAAKQLEILENKIQGSMDELDNISPLYDNLVQKEKDITKGIMKREKELSILYQKQGRATQFSSKAARDKWLQKEIDDLELVLSLNTTQEKKLMEEIQRLNDEMHGCDGNIQSCKTNITTLESQIAKSRQVFSDYKVKRDSLHDKRNAVASSQQTRYLTPIMGAGWHYYTPPCLTLYYNVQDVRRGLNSVRKICKTQNISGVHGPIIELLNCEERFFTAVEVTAGNSLFHVVVENDDKSTEIIKHLNRQKGGRVTFIPLNRVNAPRVTYPQSFDVIPLLQKLNFKHDYTPAFSQVFARTVICKNLDVASKVARTNGLDCITLEGDQVSKKGSMTGGFYDHRRSRLKFMNTIKQNAESIHIKEEELEKIDQKINELVTEQQKVDAQCAHNKSEIEELKRDLLILINRSLYFLKHLKRRKSHVDVQNQIEQLKGSIAMKKAEMGIELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKTDRIESEARKAELETNLTTNLRRRKQELEAVISSVDADSMVVDAEFKRQELSDAKMLLDDASDQLKRVSESINNRNRQIAKIKDELNKLKSLKDEYNRKLEEEAKELDQLLGKKNEFSAKEEEYTKKIKELGPLTSDAFETYKRRNIKELQKMLHKCNDQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEVYFHFISINFTLISSLDQRKDESIERTFKGVARHFREVFSELVQEGSGHLVMMKKDGDHDDDDQDEDGPREANPEGRVEKYIGVKVKVSFTKQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPLYRTAVGNMIRRLADIANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISENDALEFINQDQTQNAE* 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3887 1203 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 3 1199 - -
Mal1g3887 1203 Coils Coil 966 986 - -
Mal1g3887 1203 Coils Coil 186 216 - -
Mal1g3887 1203 Coils Coil 323 343 - -
Mal1g3887 1203 Coils Coil 260 315 - -
Mal1g3887 1203 SUPERFAMILY Smc hinge domain 501 678 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal1g3887 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1179 IPR027417 -
Mal1g3887 1203 Coils Coil 842 918 - -
Mal1g3887 1203 MobiDBLite consensus disorder prediction 1047 1071 - -
Mal1g3887 1203 Gene3D - 501 594 - -
Mal1g3887 1203 Gene3D - 1011 1203 IPR027417 -
Mal1g3887 1203 Pfam RecF/RecN/SMC N terminal domain 2 1179 IPR003395 -
Mal1g3887 1203 SMART SMC_hinge_2 523 635 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal1g3887 1203 Pfam SMC proteins Flexible Hinge Domain 523 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal1g3887 1203 PIRSF SMC 1 1192 IPR024704 GO:0005524|GO:0016887
Mal1g3887 1203 CDD ABC_SMC3_euk 3 166 IPR041741 GO:0005524|GO:0016887
Mal1g3887 1203 Coils Coil 681 708 - -
Mal1g3887 1203 Coils Coil 225 245 - -
Mal1g3887 1203 Gene3D - 598 660 - -
Mal1g3887 1203 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1199 - -
Mal1g3887 1203 Gene3D - 1 178 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3887 Mal-Chr1 77924979 77954580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3887 1022 1163 Structural Maintenance of Chromosomes family AT5G15920 26.531 4.10e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3887 K06669 - gmx:100810448 1841.62