Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3876 ATGCAAGACCTCATGATGAGGAGACGTGCTGCTGCTCTTGCTGTTCCCACGAATGACATGGCAGTGAGGGCCCGTCTTCGCCATCTTGGTGAGCCAATTACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGATGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCTGCAACTTCTGCTCCAAAAGATGAGGCTGAGGATGATCTGCAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTCGATGCAAGGATTGATATTGCTAAATATTCCTTAGTAAGGGCAGCATTGCGTATTCAACGTGCCCAGAGAAGAAGAGAGGATCCAGATGAAGATGTGGATGCGGAAATGGATTGGACATTGAAGCAGGCAGCGAATTTGAATCTTGAGTTTAGTGAAATCGGAGATGATCGACCACTTACTGGTTGCTCGTTCTCCCGAGATGGAAAAGGGCTTGCTACCTGTTCTCTAACTGGAGCTACCAAGCTGTGGAGCATGCCTAATGTTAAAAAAGTTTCTACCTTCAAGGGGCACACCGAGCGTGCTACTGATGTTGCTTATTCGCCTGTGCACAATAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAAGTATTGGAATGATCAAGGATCACTTTTGAGAACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTAGGCACTGCTAGCTTCGACAAGACATGGAGGTTATGGGATTTTGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATACGGTTTGGCTTTTCATCATGATGGATCGCTAGCTGCTTCTTGTGGACTGGATGCTCTGGCTCGTGTATGGGATCTTCGAACTGGGAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAACCGATTCTTGGCATCAGTTTTTCTCCTAATGGATATCATTTAGCCACTGGTGGTGAAGATAACACTTGTCGCATTTGGGACTTGAGGAAGAAGAAATCCTTGTACACCATTCCTGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAGGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCCAAGGTTTGGTCAGGCCGCGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGTGGGTATATTGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCGGCACTACTAGTGAGCATGCTATGGATGTTGGCTAA 1344 0.4628 MQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARIDIAKYSLVRAALRIQRAQRRREDPDEDVDAEMDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSLTGATKLWSMPNVKKVSTFKGHTERATDVAYSPVHNNHLATASADRTAKYWNDQGSLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDFETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGTTSEHAMDVG* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3876 447 Coils Coil 53 73 - -
Mal1g3876 447 Gene3D - 2 62 IPR036285 -
Mal1g3876 447 PANTHER WD40 REPEAT PROTEIN 1 436 - -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 313 - -
Mal1g3876 447 Gene3D - 273 360 IPR015943 GO:0005515
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 225 IPR001680 GO:0005515
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 402 IPR001680 GO:0005515
Mal1g3876 447 Pfam WD domain, G-beta repeat 228 266 IPR001680 GO:0005515
Mal1g3876 447 Pfam WD domain, G-beta repeat 315 350 IPR001680 GO:0005515
Mal1g3876 447 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Mal1g3876 447 Pfam WD domain, G-beta repeat 356 393 IPR001680 GO:0005515
Mal1g3876 447 Pfam WD domain, G-beta repeat 188 225 IPR001680 GO:0005515
Mal1g3876 447 Pfam WD domain, G-beta repeat 398 435 IPR001680 GO:0005515
Mal1g3876 447 SUPERFAMILY WD40 repeat-like 144 434 IPR036322 GO:0005515
Mal1g3876 447 CDD WD40 156 435 - -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 435 - -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 225 - -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 352 - -
Mal1g3876 447 Pfam pre-mRNA processing factor 4 (PRP4) like 22 48 IPR014906 -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 393 - -
Mal1g3876 447 Gene3D - 361 443 IPR015943 GO:0005515
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Mal1g3876 447 PRINTS G protein beta WD-40 repeat signature 422 436 IPR020472 -
Mal1g3876 447 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Mal1g3876 447 PRINTS G protein beta WD-40 repeat signature 253 267 IPR020472 -
Mal1g3876 447 SMART WD40_4 185 225 IPR001680 GO:0005515
Mal1g3876 447 SMART WD40_4 311 350 IPR001680 GO:0005515
Mal1g3876 447 SMART WD40_4 143 182 IPR001680 GO:0005515
Mal1g3876 447 SMART WD40_4 396 435 IPR001680 GO:0005515
Mal1g3876 447 SMART WD40_4 227 266 IPR001680 GO:0005515
Mal1g3876 447 SMART WD40_4 353 393 IPR001680 GO:0005515
Mal1g3876 447 SMART WD40_4 269 308 IPR001680 GO:0005515
Mal1g3876 447 ProSitePatterns Trp-Asp (WD) repeats signature. 337 351 IPR019775 -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 271 - -
Mal1g3876 447 SUPERFAMILY PRP4-like 3 55 IPR036285 -
Mal1g3876 447 SMART pr04_2 17 70 IPR014906 -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515
Mal1g3876 447 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Mal1g3876 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Mal1g3876 447 Gene3D - 130 272 IPR015943 GO:0005515
Mal1g3876 447 PANTHER U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4 1 436 - -
Mal1g3876 447 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3876 Mal-Chr1 77561064 77564115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3876 238 434 U-box Gene Family AT2G33340 22.172 7.86e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3876 K12662 - gmx:100788948 791.571