Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3849 ATGGATCACACTAACAAAAATTCCAATCACTCCCTTTCATACTCCACTCTCTTCAATCTCGACTCTTTGATGAACTTTCAACTTCCACAACAAGATCATCATGAATTTGATTATTACGGGAATATTAGCCGGGATGAAGAAAACAGAGATATTCGAGGTGGTGGGGCAATTGCAAATCACAGTAACGGGAAGGTGCATCCGAAGGATGTGAATTTGTCGAAGAAGAGGGTGCGGTCTCAAACCAGTGACGACGAGGACAAAGGAAATTTTTACGGTGCATACATGACAGAGGAGCGATATCGATTAATGCTGGGTGACCGTGTTCAGAAATACAAGATGAGGTCTAAGGATGTGTCCTTTAGTCCTGCCCATAATCGGGCTGTTGTCCCGCTTGTCAAAAGTAATAATGGATTAAAAGCTCACAAGTCAAGGAACGATCATCAGGGAGGATTGCATGCCACTGAGACTTTATCTGAATGGTTATATAATTCCAATTCCAATTCTCTGAAACATGGAAACCACCGTGACACAGATTTCGTACCGCGAAATGGCACTCATAGGCTTATGTATGAATCTTCTATTTTAGAAATCGGGGATGGTATCGCATACAAGATTCCTCCAATTTATGATAATCTGGCTACAACGCTGAACCTTCCGAGCTTCCCTGATATCCATGTGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCGTTGGCAGCAATGATGTCTGCTGACAAAAGGTTAGGAAATAAAAACCGAGCAGGCATGGGGGAACCTCTATCTCCATACAAATCGCTTCAGGCACGAATAAAGGCCATGTCAGCTTCTAATTCACCTCAAAAATTCAGTCTGAATGTGTCTGATATTGGTTTAAATTCATCCATTCCGGAGGGGGCTGCTGGAAGCATAAAGCGGTCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAAAAAGGTGACACTTATGAGATCATTGAGCGAAGCCTACCCAAGAAGCAAACGGTAAAGAAAGATCCTGCTTCAATTGAGAAGGATGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAGGCATCATAGGAATTTTACTACTCTTAATCGAAAGCAACTCTTTGATGCCAAGAGGTGCTCAGAATACTGTCAAAGAGAGATTAGAATGAAAATTAGTAGATCGTTTAAATGGAATAGGGGTGCTAGCATTCGCACCCGGAAACTTGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCTGAAGTGAGAAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGTGAGCAGGAGCTCCGAGAAGCTAAGAGACAACAACAAAGGCTGAATTTTTTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAAGGTAAAAAAAAAGATCAAGATGCACCGTTTGACTCATCAGATGCTGGGCCTAATGAGGAGGAAGATCCAGAAGAGGCTGAGTTGAAGAAGGAGGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAAAAAGTTGACTAATGCTTTTGACAACGAATGTTTGAGACTGCGGCAGGAGGGTGAAGCTGATTCACTTGTGCCAGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGCATCCTCAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATACAAGCTATGGTCTTTTTAGCTCATTTAGCAGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCCGCATCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAAAGACTACCGTATTGGGGAGGGCTATCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGCATGGCAATACCAGAAATATATTTTCTTGATAGCATAAACTCCTTGAGATCTGCTGTTGATGTGTTTCGTTTTCGTAAAAGTAGAAGATTTAAGCTTAGTGCAAGGTTCTTTCTTGCAATAGAAGATTCATAG 2187 0.4179 MDHTNKNSNHSLSYSTLFNLDSLMNFQLPQQDHHEFDYYGNISRDEENRDIRGGGAIANHSNGKVHPKDVNLSKKRVRSQTSDDEDKGNFYGAYMTEERYRLMLGDRVQKYKMRSKDVSFSPAHNRAVVPLVKSNNGLKAHKSRNDHQGGLHATETLSEWLYNSNSNSLKHGNHRDTDFVPRNGTHRLMYESSILEIGDGIAYKIPPIYDNLATTLNLPSFPDIHVDEFYLKGTLDLGSLAAMMSADKRLGNKNRAGMGEPLSPYKSLQARIKAMSASNSPQKFSLNVSDIGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQTVKKDPASIEKDEMDRIGKIWVNIVRRDIPRHHRNFTTLNRKQLFDAKRCSEYCQREIRMKISRSFKWNRGASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKGKKKDQDAPFDSSDAGPNEEEDPEEAELKKEALKAAQEAVSKQKKLTNAFDNECLRLRQEGEADSLVPEVAGASNIDLQTPSTMPVASSVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRSMAIPEIYFLDSINSLRSAVDVFRFRKSRRFKLSARFFLAIEDS* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3849 728 ProSiteProfiles DBINO domain profile. 361 486 IPR020838 GO:0003677
Mal1g3849 728 SMART ultradead3 579 728 IPR014001 -
Mal1g3849 728 Gene3D - 556 703 IPR038718 -
Mal1g3849 728 Coils Coil 433 472 - -
Mal1g3849 728 MobiDBLite consensus disorder prediction 481 514 - -
Mal1g3849 728 PANTHER CHROMATIN-REMODELING ATPASE INO80 18 686 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Mal1g3849 728 PANTHER HELICASE SRCAP-RELATED 18 686 - -
Mal1g3849 728 Pfam SNF2-related domain 598 666 IPR000330 GO:0005524|GO:0140658
Mal1g3849 728 Pfam DNA-binding domain 357 486 IPR020838 GO:0003677
Mal1g3849 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 678 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3849 Mal-Chr1 76343239 76347734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3849 543 666 RAD5 or RAD16-like Gene Family AT1G05120 32.061 9.68e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g3849 DBINO 3.9e-45 CL0023