Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3848 ATGTATACTACGCTGGAGGTCTCAACCCCATATCATTTCAGATACCAAAGCTTGTCTATCAGGAAATCATGCAAAGCTCTAGTTCAGTTGTTGGTCGTGGTGTTTGCAGAGAAACTTTTCAGAAACATTTTAATATTTTTAAACCAGAAAATGTCCATCGATCTATTTTCTCTGACAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGATGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGCGTATTATTTTCTATAATGAGATGGGAACAAAATGTTTTTGATGAAGTTGGAGACTTTCTTACAGATTACATTGTAGATGATCCTGAATGTAATTTCCTTGAAAAAGGTAAAGTGAAAGCTGTTACAAGAATGTTATTGCTGCCATCCAGATCAGATACCAAGTTTCTTCAAAAACAATTTGCAACTGGGCCCTCTTATGCTCCTTTTGAGGGCTTGGTAGTCTCACATCAGGATAGGCTTTTATCTAATGCAAGGCTTCTTTACTCAGCATACACATATATTCCACCAGCAAGAGGTCCCCCTATTGGTGCTCATTGCTCTGATAGAAACTTCTCCTATAAAAGGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTTTTTGTTGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCCTCATTGTTTAATTCAAGAAATCGATTCTGAATTACCTGTTTCACAGCCTGCGCTGCAGTTAACTCACAGTATTTTTGGATCCTCACCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATTTTACTGAAACGCTTACGGGCAGGAAATCATCGCATTTTCTTGTTTTCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACCGCAAATATAAGTATTTTAGACTTGATGGGTCATCTACAATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGGGATTGGAATACGACATTGGATCTTCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACGGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAGAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGCGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTGGATGATGACCAATTGCAACAAAAATTTAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAGAAAACAATCTATGAAGGGCATTCGGGTAAGCGAAGATGGTGATGCATCTCTGGAAGATTTGACAAACTCTGTAGATCAGAGTACTGCAGATAATGATGCTTTCGTGGATCCGGAGGGGTCAAAGTCTAGTACTAAGAAGAGAAAATCAACTTCAGACAAGCAAACTTCAAGATCAAAGAATTCTAAAAAGTTGAGTGAAGTGGGCAGTATGCCTGTAGATGAAATGGATGATACCCATCTAAATAATGATCGAGTGGGCCAGAAACCAAAGAGACCAAAGCGGACCAAGAAAAATGTAAATGAAAAGTGTGAAGAAGTTTTTACTGGGACAGCTACCATATTCTCAGAGCAGACTTAA 1773 0.3954 MYTTLEVSTPYHFRYQSLSIRKSCKALVQLLVVVFAEKLFRNILIFLNQKMSIDLFSLTTNVESGNFGFTHLMDLSPQEMAFLATGSFMERVLFSIMRWEQNVFDEVGDFLTDYIVDDPECNFLEKGKVKAVTRMLLLPSRSDTKFLQKQFATGPSYAPFEGLVVSHQDRLLSNARLLYSAYTYIPPARGPPIGAHCSDRNFSYKRIEELHDPWVKRFFVGFARTSECNGPRKPNHHPHCLIQEIDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRIFLFSQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYERDWNTTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDDQLQQKFKEIPLQVKDKQKRKQSMKGIRVSEDGDASLEDLTNSVDQSTADNDAFVDPEGSKSSTKKRKSTSDKQTSRSKNSKKLSEVGSMPVDEMDDTHLNNDRVGQKPKRPKRTKKNVNEKCEEVFTGTATIFSEQT* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3848 590 MobiDBLite consensus disorder prediction 467 573 - -
Mal1g3848 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 465 IPR027417 -
Mal1g3848 590 MobiDBLite consensus disorder prediction 541 560 - -
Mal1g3848 590 MobiDBLite consensus disorder prediction 467 487 - -
Mal1g3848 590 CDD SF2_C_SNF 274 406 - -
Mal1g3848 590 Pfam Helicase conserved C-terminal domain 286 395 IPR001650 -
Mal1g3848 590 Gene3D - 250 509 IPR027417 -
Mal1g3848 590 MobiDBLite consensus disorder prediction 488 502 - -
Mal1g3848 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 436 IPR001650 -
Mal1g3848 590 SMART helicmild6 312 395 IPR001650 -
Mal1g3848 590 MobiDBLite consensus disorder prediction 511 532 - -
Mal1g3848 590 PANTHER CHROMATIN-REMODELING ATPASE INO80 39 571 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Mal1g3848 590 PANTHER HELICASE SRCAP-RELATED 39 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3848 Mal-Chr1 76331196 76335795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3848 246 416 RAD5 or RAD16-like Gene Family AT1G61140 33.333 9.45e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3848 K11665 - gmx:100780615 835.484