Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3829 ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATAATAGGCAAGTTACATTTTCAAAGAGACGAAATGGTTTGCTCAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGTACTGGCAAGCTTTATGAGTTTTCAAGCACAAGCATGGAGCATACCCTATCAAGGTACGGTACTAGAGGCCTTGATTTGAAGAGTGGAGCAGAGCAGCAACAACCTAGTGACCAGCCTCCACCACAAGTTGTGGAACTTGATACTACCATTTTGCAGGAAGAAATAACAAAACTTCGTTCAGCTTACTTAAGAATGAGCGGTAAGGAGCTTGATGGATTGGACCTTAAAGAACTGAAGTTCCTAGAAAATCAACTGTGTGAAGGAATATCAGCTGTCAAAAACAAGAAGGAACAAGTGCTTATTGAACAACTTAAGAGATCCAGGTTACAGGAGCAAAAGGCTATGATGGAGAATGAAGCTCTTCGCAAACAACTTGAGGAGATAGTAAATAAAAGAAAGGCAGAGTTCATTGAATTTCATCCGTTGGATAGAACAATTTCAATCAACAGTTCAAAACAAGATTATGCCTTAGAGGATAACAAGATTTCAGATACTTCCTTGCAGTTAGGGTTGACATCAGATTATGATTGCAAGAGGAAAACATTGAAGATGGAACCTAGCAACGACTCGGGTAGTCAAGTGGCTTCACAGTGA 744 0.3952 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSTSMEHTLSRYGTRGLDLKSGAEQQQPSDQPPPQVVELDTTILQEEITKLRSAYLRMSGKELDGLDLKELKFLENQLCEGISAVKNKKEQVLIEQLKRSRLQEQKAMMENEALRKQLEEIVNKRKAEFIEFHPLDRTISINSSKQDYALEDNKISDTSLQLGLTSDYDCKRKTLKMEPSNDSGSQVASQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3829 247 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Mal1g3829 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal1g3829 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal1g3829 247 Coils Coil 154 181 - -
Mal1g3829 247 Pfam K-box region 95 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g3829 247 PANTHER BNAC04G24260D PROTEIN 1 235 - -
Mal1g3829 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g3829 247 Gene3D - 14 70 IPR036879 GO:0003677|GO:0046983
Mal1g3829 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g3829 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g3829 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g3829 247 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g3829 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 235 - -
Mal1g3829 247 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Mal1g3829 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3829 Mal-Chr1 75909630 75915045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3829 1 240 MADS-box Gene Family AT5G13790 45.968 3.74e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal1g3829 K-box 7.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3829 - - gmx:100792278 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3829 1 75909630 75915045 Mal1g3829 1 75909630 75915045 ECH