Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3826 ATGGAAGAGAAAAAGAAGAGCATCGGGAGAACAAAGATTGAAATTAAGAAGATTGAGAATTTGAGTAGAAGACAAGTAACCTTCACCAAGAGACGTGATGGATTGCTCAAGAAAGCCGAAGAATTGTCTATTCTTTGTGATGCGGAAGTTGCTGTCATCGTATTCTCTGCCACTGGAAAGCTTTATGAGTTTTCAAGCACAAGCATGGAGCACATCCTTTCAAGGTACGGTGATTTGGATGAAGCAGAGCAACATCAACCTCCTGCACAAGTTGTGGAGCTTGATACTACCATTCAGCAGGAAGAAATAACAAAACTTCGCTCAGATTATTTAAGGATGAAGGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGGACCTAGAAAATCAACTTTCTGAAGGGATATCAGCTGTCAAAAACAAGAAGGAACATGTGCTGTTTGAACAACTTGAGAAATCCAGGTTAAAGGAGCAAGAAGCTATGTCGGAGATCAAAGCTCTGCGTAAACAACTTGAGGGGATAGAAAATAAAAGCAAAGATGATGGTAGCAAAAGGAAAAGGAATAAAGCATTAAGGATGAGAGCTTGCAACAACTAG 603 0.4046 MEEKKKSIGRTKIEIKKIENLSRRQVTFTKRRDGLLKKAEELSILCDAEVAVIVFSATGKLYEFSSTSMEHILSRYGDLDEAEQHQPPAQVVELDTTIQQEEITKLRSDYLRMKGKELDGLGLKELQDLENQLSEGISAVKNKKEHVLFEQLEKSRLKEQEAMSEIKALRKQLEGIENKSKDDGSKRKRNKALRMRACNN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3826 200 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 MobiDBLite consensus disorder prediction 175 200 - -
Mal1g3826 200 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 Gene3D - 21 102 IPR036879 GO:0003677|GO:0046983
Mal1g3826 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 161 - -
Mal1g3826 200 Coils Coil 1 21 - -
Mal1g3826 200 Coils Coil 123 146 - -
Mal1g3826 200 ProSitePatterns MADS-box domain signature. 10 64 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 PANTHER - 8 161 - -
Mal1g3826 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 Pfam K-box region 100 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g3826 200 MobiDBLite consensus disorder prediction 175 189 - -
Mal1g3826 200 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal1g3826 200 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g3826 200 Coils Coil 152 179 - -
Mal1g3826 200 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Mal1g3826 200 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3826 Mal-Chr1 75826938 75830106 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3826 8 174 MADS-box Gene Family AT3G57390 48.333 1.96e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal1g3826 K-box 3.4e-13 No_clan