Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3738 ATGGATGTGGAGGATTATAGGCATAAAGAGGAAAAAAATCATGGAAATACTGAAGAAGGCGTGACTGTTGCACTTCATATAGGTTTACCAAGCCCTAGTGCTGCTGAGATTGCAACTATGATGATGTCATCTTCATCTTCTGAGAAGATGATTCATGAAAAAGATCAATTACAAGGAGATGTTACTATTAGTGAGGAATCTTCTTCAGCTGGTTTTTTGAGTACTAATAGATCAATGAACAAGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTTATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGCACACAACCAACAGGTATGCTAAGGCTTCCTTGTTATTGTTGTTCACCAGGTTGCAGAAACAATATCGATCATCCAAGAGCAAAGCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAAAGGAAACATGGAATTAAGCCTTTCATGTGTAGAAAGTGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGATCACTTAAAGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTTGAACAAGATAATGATTCCACTCAGACTCATTAG 789 0.3853 MDVEDYRHKEEKNHGNTEEGVTVALHIGLPSPSAAEIATMMMSSSSSEKMIHEKDQLQGDVTISEESSSAGFLSTNRSMNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTQTH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3738 262 SUPERFAMILY beta-beta-alpha zinc fingers 168 203 IPR036236 -
Mal1g3738 262 Gene3D Classic Zinc Finger 98 121 - -
Mal1g3738 262 Gene3D Classic Zinc Finger 160 237 - -
Mal1g3738 262 SUPERFAMILY beta-beta-alpha zinc fingers 95 121 IPR036236 -
Mal1g3738 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 203 IPR013087 -
Mal1g3738 262 SMART c2h2final6 99 121 IPR013087 -
Mal1g3738 262 SMART c2h2final6 183 203 IPR013087 -
Mal1g3738 262 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 13 259 - -
Mal1g3738 262 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Mal1g3738 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Mal1g3738 262 PANTHER ZINC FINGER PROTEIN WIP2 13 259 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3738 Mal-Chr1 72455118 72458490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3738 21 257 C2H2 Transcription Factor Family AT3G57670 76.863 1.50e-140 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g3738 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3738 - - gmx:100813583 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3738 1 72455118 72458490 Mal1g3738 1 72455118 72458490 ECH
Mal3g3561 3 112804743 112807096 Mal1g3738 1 72455118 72458490 PCT