Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3709 ATGGATTCTAATACTTATCAACTCAAACAACAGAACCAACCAAATTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTTTTCTCAAATCTAACACCTTCTTCTGGTGATGCTAATAAAGTTACTAAACAGTTTTGGGATGGTTCTGAATCAGAGAGATTTGTGAGTAACGATAATATTTCTGGTTCATCTTGTTCTAAGGAAATGAGTGGAATGAATTCTGGTTATGGTGGTGGTGGATTACCACCTCACTATCCTAGACATGGTTCTGCTATGGATGGTTCTTTTGGATTGGATCATGAAACCATGAATAAGAATTTTGGTTCATCTCTTCTTAGACAGGGTAGTTCCCCAGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGCAGGGTTTTCCACCATGAAAGGTGTTGGAAACTATGCCACGGTGAATGGAAGTAACGGCGAACTTAGTCCGTCTATTAACCGATTGAACACACAGGTTAGCTTCCCTTCAAGAAATGCTTCTTTGGGAATGTTGTCACACATCTCTGAAATAGATAGTGAGGACATTGAAGCAACTAGCCCTGATGATGGAGGTAGCAATGGCGATACTTCACATTATGGCTTTGGATTCCCTTATAGTTCTTGGAATGACACTCAATCATTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGCGGTAACGAAAAAATGTTTTCTGATATTCAGAGTGGAGGGCTTGGAAATCAAGTTCATACATTATCACATCAGTTGAGTTTACCAAACACTTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAACGAGGCTGTGCTACTCATCCTCGAAGCATTGCCGAGAGGGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAAATCTTCAAAAACAATTCAAGTCTCTAAGTGATAAACGAGCAAACTGCAAATGCATGAGGATGCAGAAGTCAGATACAAATCAAATTTCTTGA 1098 0.3934 MDSNTYQLKQQNQPNSGLLRFRSAPSSLFSNLTPSSGDANKVTKQFWDGSESERFVSNDNISGSSCSKEMSGMNSGYGGGGLPPHYPRHGSAMDGSFGLDHETMNKNFGSSLLRQGSSPAGLFSNISFQNAGFSTMKGVGNYATVNGSNGELSPSINRLNTQVSFPSRNASLGMLSHISEIDSEDIEATSPDDGGSNGDTSHYGFGFPYSSWNDTQSFTENLSGLKRGRSGNEKMFSDIQSGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRMQKSDTNQIS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3709 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 354 IPR036638 GO:0046983
Mal1g3709 365 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 357 - -
Mal1g3709 365 MobiDBLite consensus disorder prediction 1 21 - -
Mal1g3709 365 PANTHER TRANSCRIPTION FACTOR BHLH130 10 357 - -
Mal1g3709 365 Gene3D - 288 362 IPR036638 GO:0046983
Mal1g3709 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 337 IPR011598 GO:0046983
Mal1g3709 365 SMART finulus 293 343 IPR011598 GO:0046983
Mal1g3709 365 Coils Coil 334 354 - -
Mal1g3709 365 MobiDBLite consensus disorder prediction 72 92 - -
Mal1g3709 365 Pfam Helix-loop-helix DNA-binding domain 292 338 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3709 Mal-Chr1 71120667 71123568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3709 1 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.933 9.15e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g3709 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3709 - - gmx:100819605 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3709 1 71120667 71123568 Mal1g3709 1 71120667 71123568 ECH
Mal1g3709 1 71120667 71123568 Mal7g2366 7 83088609 83091676 ECH
Mal3g3573 3 112943473 112945649 Mal1g3709 1 71120667 71123568 PCT