Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3658 ATGAGTTCTGGTTCTGGTTTTGTACCTTCTCCTTCTTCACCACCTAACTCATCTACTGTTTTCCTTGATGGATTAAAGTTTGGTAAAAAAATCTACTTTGAGGATGCAACAAGTACTGTTGTTTTAGCTCAAACCAAATCAAATGCTGTTGGTGCTTCTTCTTCATCTTCTTCAGGAATGAAAAGAGGAACTAATCATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCTTCTGTTGTTGTTTCTGGTTTGGAGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAATTCGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAAAGGCGGAGAAAGCCCCAACCAAGCTCGTGTTTAACCTCGCGTTTTCCCATACTCTCTCCACCTACTTTTGATAACAATGGGAAAGGTAATGACTTTATGATGGAATGTGGTTCATACCAAAAATTTACTCTAGGAAATGCATTATCAACTCCGAGATCAGCCGAGCCTGTTCGCGGTGATCAAACAACACAGTTTACATGGCAAAACAACTCATCGACACCATCCAATTTTTTCCAACAAGGAACAAACTTCCACGGTCCTCCTACTAGACATCCTCCAATCATGGAAAACTACAATGAAGTCACAGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTACTCTAGAAACACAACACCAAGTGTTGAGATGAACAACTTGTTGAATTTCAATGGTTCACTCATGACACAATCTTATCAAGGTGTAGCCAATTATCAACCTCCAACAAATACTTCTTCTTGGTTTCTTAAGAGCATTGATTCTCGTAACTGTTTGTCTTCCGAGGCTGTTCCTGATCTTGGTCTCGGTCAAAATTCACAAGCTATTCATAGCAATCTTTCTGGTGAGCTTGATTTGTCACAAGGCAAGAGACATTACTGGTCACTTTAA 1035 0.4077 MSSGSGFVPSPSSPPNSSTVFLDGLKFGKKIYFEDATSTVVLAQTKSNAVGASSSSSSGMKRGTNHPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPSVVVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSCLTSRFPILSPPTFDNNGKGNDFMMECGSYQKFTLGNALSTPRSAEPVRGDQTTQFTWQNNSSTPSNFFQQGTNFHGPPTRHPPIMENYNEVTDSSCALSLLSNQTWYSRNTTPSVEMNNLLNFNGSLMTQSYQGVANYQPPTNTSSWFLKSIDSRNCLSSEAVPDLGLGQNSQAIHSNLSGELDLSQGKRHYWSL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3658 344 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
Mal1g3658 344 Pfam SBP domain 70 143 IPR004333 GO:0003677
Mal1g3658 344 MobiDBLite consensus disorder prediction 47 67 - -
Mal1g3658 344 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Mal1g3658 344 MobiDBLite consensus disorder prediction 134 155 - -
Mal1g3658 344 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Mal1g3658 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 341 IPR044817 GO:0003677
Mal1g3658 344 MobiDBLite consensus disorder prediction 47 64 - -
Mal1g3658 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3658 Mal-Chr1 68852325 68856213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3658 25 298 SBP-box Gene Family AT3G57920 43.509 9.67e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal1g3658 SBP 4.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3658 - - gmx:100807165 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3658 1 68852325 68856213 Mal1g3658 1 68852325 68856213 ECH
Mal3g3595 3 113149748 113153016 Mal1g3658 1 68852325 68856213 PCT