Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3648 ATGGCGTCGAAAGGTCCAAAGTCGAAGATTGATCCTGACTATAAAGCTAAACGGCATAAGGCTCTTGAAGCTTCAAGGGAGCCTAGACGACCCAAAACTCATTGGGACCATGTGTTAGAAGAGATGGTGTGGCTATCAAAGGACTTCGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAAAGCCAGCAAAGAAGGCATGTTAGATCCAGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAGAAGCTGGTTCTTTACAAGCATCAAACGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTAATACACCAGCAGAGAAAAATTCTGCAGAGCATCACATGAGTTTTCAATGCAAAGATATAGACGGAGACATTATGAATGAACCTAAGGAAGCTAATGTTGCAGAGTATAAATCCGGTGCACTTGATCATGATGAAGAATATGATGTACAATCTGACGATGTATCGGATGATGATGAGCAAACCCTCGAGGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCTGCTTTGCACAGTGAAATGGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGCTGGAGATAAAGGAGAATTGGCAAGGCAGGAAAGTAGTCCAGAGCGTAGTGAAGATGGTGGAAAAATAGTTAGAACTGGTGATGATGATGGTCAGGAAGAACTAGTATCAGAAAATGGAGATCATATATCTATCAGCAAAATATGTACAAAGGACTCCAGCATGGTCCCCGATCGACGTTGTGATGACAGTAACGGTGATGTAGCTACAGCAACAAATAATCTATCTCAAAATGAGGATCATCAACCTGAAAATCTTGAAGAGGTTCCCAGTGAGACAGCCAATGAAAATGTTCCATTTGATTTTTCTGACGAAGAGGAAGACGGTGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCTGAGGAAGAAAAACTGGACAAAGTTGATGCAATTGATCCAAAAGATGAGATTGCATTACTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTTCTTGCAAGGTATAAAAAGGACCTGAGTGATGATTGGGATCAAGAAGATGAGTCAGATTATGCTTCTGCTTCATCAGAAGACCAGCAGAATTTACCAGTCCATGATGCTGCTGAGCAGAAAGATCCGGATGTTTTGGTGTATGAAAATATGAAATCCGGTGAGCAGCTGGCTACCGTACAGACCCAGGCAGAAGAACATGGGGAAGCACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGTACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATTCCCCTTTCTACTCAAGTACTCTCTACGTGAGTATCAACATATCGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTCAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACTATTATGACTATAGCTTTGCTTGCACATCTTGCCTGCGAAAAGGGGATTTGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTGTGCATAACAACTTACAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGAATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTCGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTAGATCGCCTCCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTGAAGAGAGATGTAGAAAAGCAACTTCCCATGAAACATGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTTATTGCTAGCTCAGAAACTCAAGCTACACTTGCAAACGCCAATTTTTTTGGGATGATTGGTATTATCATGCAACTTCGCAAGGTTTGTAATCATCCTGACCTGTTTGAGGGCCGTCCTATCGTCAGTTCTTTTGATATGTGTGGGATTGATACTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAACTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGTCTTTTATTTACTCATCTTGACTATAGCATGACATCTTGGGAGAGTGATGAAGTGCAAGCTATTGAGACCCCTACAACTTTAATTATGGAACGCACTGATAGGACTGATCTGGAAGTAATTAAGCCCGGACTGAAATGTCAGAAAAAACAGCAAGGCACAAACATTTTTGAAGAGATTCAAAGGGCAATTTGGGAAGAGAGGATGAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATATGATATTCAGGAAAAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCGATTCCTGCCGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAACAGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCACCACTATTGTCACCCATCAGGCCCGCAATTGTTCGTCGGCAAGTATACTTCCCAGACAGGCGACTTATACAATTCGACTGTGGAAAATTGCAGGAGCTAGCAATTTTGCTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTTATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCTTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACACAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGCCAGACGCGTGAAGTCCATATATATCGATTGATCAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATCTGGTTATACAAAGTGGGGGCTATAATACTGAGTTCTTTAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAGACACACCGAAGGAGAAAAACCAGAACAGTGGAGAAGTGTCTGTAACTAATGCAGATGTGGAAGCTGCATTAAAACATGTCGAAGATGAGGCAGATTATATGGCCCTGAAGAGAGTTGAACTGGAAGAAGCCGTGGATAACCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAAGATGAGTATGTAAATGAGGATGATGAGCCTCAAGAGTTAGGTGAATCTGTCTCCAATTTGAACAAAGAGAATGCATTAATGTTAAATGGAGGTGATCCCAAGGAAGATAAACTACCCACTTTTGTTGCCAAAGATGATGATGTTGACATGCTGGCAGATGTGAAACAGATGGCGGAAGCTGCAGCTGCAGCTGGACAGGCTTTATCTGCCTTTGAGAGTGAGCTACGCCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGCCAGGATTGAGGACACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTCTATGAAAGCTGGGATGCTGATTTTGCAACAACGGCTTACCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGATAAAAAGACTCAAGCACCAAGTGATTCGAAGCCCAAGCCTAAAAAGAAACCCAAGAAAACAAAGTTCAAATCTCTGAAGAAAGGATCCTTAACCTCTGGCGTAAGAAATGTGAAAGACGAGCTACGAGCAGTGCCAATGGTCATAGATGATGATGTTGCCACTAGTCCTGATTTTGTGTCACCAAGTTCAAGTATGCATAAAAAACGCAAGTCTACATTAACAGCTGATGGTGTAGAAGAAAGGATATTTAAGAAGTCCAAAAAGTCCAAGAGGGATCTTCTTGACATTTATGATTCAGATTTGGAATCCAACTCATTAGATATGCAGGATGAACATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTAGAACAGAAAACAGTTGGCAGGAGTAGGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTGTTTATAATAAAATCAGAAAAACTGAAGAAGGGAAATATTTGGTACAAAGATTGTATTCCATCAGCTGATTTTTGGTTGCCTCATGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGAAATTCTTTATAGCATGACTGCTGGTGGGGCATATAGGGGGAGATTTCGTCATCCTGTCCATTGTTGTGAGAGATTCAGAGAATTATTCCAAAAATATGTCTTGTTTTCTATGGACAATGCAAATCATGAGAAAATCAACAATACAGCCTCTGGAAAGGCTCTTAAAGTAACAGAGGAGAACATTCGAATATTGTTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTTCTGTCTGGAAGGTGGCGTCACATGTTGACCGCAGGCAAAATCCACCTGCCACTTGCAATGGTCTCTATTTCGATCAGAGTTTCTTCACTTCAATTGGCCAGCACTCACAAAATCCCCTGAACAAACCCTATGAACGGATGACGTTTTCTAATTCGGCCCAGAGCAAGAAGTTAATTGCAGCTGCACTGGATGACATGAGAAGTAGGCCAGATAATGACAGAATATTCCTCTCTAACCAGGATGAAGACATGCCGATGAGTGCAGATCAGGTGGATATAACTCTGGTGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCGTTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCACCAACATCTTTAAATAAGCACACAAGAGATGATCATCTTAGAACGTGTGTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACAAGAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCGACAAATGATTCAAGGTCTCGACCTGGTTTGAGGATACAATCTTCAGGAAAGCAAAGGTATTCCAACTCCGATGTTACTAAGCCATCAAGGTCAAAGACCAAAAGAGCTTCAGTGGATTCTAATGAAATGCATCGCCATCAGGCTGAGCCATTATTCCCGCCAATGCCGTCGCTTCAAGAACTGACATTGGATCTCCCTTCATCCACTATGGACGAATTTGGATTTAACATGGATAGCAATTTTCCCTTTGATTTGAATGGGGAAAGTTCATTGGAAAGGGAAGATTTTGGTGTGGTCACACATGAATTTGTAACTGAGTTAATCTCAGGCCTTGATGATTGTATAGCATTCTCTGAATATACCGATATTAGATAA 6144 0.4136 MASKGPKSKIDPDYKAKRHKALEASREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALKASKEGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQTELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDANTPAEKNSAEHHMSFQCKDIDGDIMNEPKEANVAEYKSGALDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALHSEMDLPIEELLKRYAGDKGELARQESSPERSEDGGKIVRTGDDDGQEELVSENGDHISISKICTKDSSMVPDRRCDDSNGDVATATNNLSQNEDHQPENLEEVPSETANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDKVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDWDQEDESDYASASSEDQQNLPVHDAAEQKDPDVLVYENMKSGEQLATVQTQAEEHGEAPCENSEERESEDIIADAAAAARSVQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMIGIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDTQLSSSICSMLLPNSFSTVDLEGLGLLFTHLDYSMTSWESDEVQAIETPTTLIMERTDRTDLEVIKPGLKCQKKQQGTNIFEEIQRAIWEERMREAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIQEKKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKDTPKEKNQNSGEVSVTNADVEAALKHVEDEADYMALKRVELEEAVDNQEFTEEASGRLEEDEYVNEDDEPQELGESVSNLNKENALMLNGGDPKEDKLPTFVAKDDDVDMLADVKQMAEAAAAAGQALSAFESELRPIDRYAIRFLELWDPIIDKAALESEARIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEDKKTQAPSDSKPKPKKKPKKTKFKSLKKGSLTSGVRNVKDELRAVPMVIDDDVATSPDFVSPSSSMHKKRKSTLTADGVEERIFKKSKKSKRDLLDIYDSDLESNSLDMQDEHAESDPCKSLVVLEQKTVGRSRMGGKISITPMPVKRVFIIKSEKLKKGNIWYKDCIPSADFWLPHEDAILCAVVHEYGPNWSFVSEILYSMTAGGAYRGRFRHPVHCCERFRELFQKYVLFSMDNANHEKINNTASGKALKVTEENIRILLDVASEQANRELLLQKHFFALLSSVWKVASHVDRRQNPPATCNGLYFDQSFFTSIGQHSQNPLNKPYERMTFSNSAQSKKLIAAALDDMRSRPDNDRIFLSNQDEDMPMSADQVDITLVFPKEESDSLSSFPSVIKLSIKGDEAPTSLNKHTRDDHLRTCVSAAENRFREVTRACEEDSSGWASSAFPTNDSRSRPGLRIQSSGKQRYSNSDVTKPSRSKTKRASVDSNEMHRHQAEPLFPPMPSLQELTLDLPSSTMDEFGFNMDSNFPFDLNGESSLEREDFGVVTHEFVTELISGLDDCIAFSEYTDIR* 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3648 2047 MobiDBLite consensus disorder prediction 348 373 - -
Mal1g3648 2047 SMART helicmild6 1093 1176 IPR001650 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 253 281 - -
Mal1g3648 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 744 IPR027417 -
Mal1g3648 2047 SMART ultradead3 518 711 IPR014001 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 8 32 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1286 1313 - -
Mal1g3648 2047 PANTHER HELICASE SRCAP-RELATED 16 1935 - -
Mal1g3648 2047 PANTHER HELICASE SRCAP 16 1935 - -
Mal1g3648 2047 Pfam SNF2-related domain 539 811 IPR000330 GO:0005524|GO:0140658
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1298 1312 - -
Mal1g3648 2047 Coils Coil 1403 1423 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1527 1546 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 302 379 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1 32 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 199 219 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1470 1485 - -
Mal1g3648 2047 Gene3D - 491 767 IPR038718 -
Mal1g3648 2047 ProSiteProfiles HSA domain profile. 22 95 IPR014012 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1914 1979 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 315 329 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 463 485 - -
Mal1g3648 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1067 1217 IPR001650 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1914 1950 - -
Mal1g3648 2047 SMART bromneu2 23 95 IPR014012 -
Mal1g3648 2047 CDD DEXQc_SRCAP 522 744 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 188 222 - -
Mal1g3648 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 1243 IPR027417 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1951 1969 - -
Mal1g3648 2047 Gene3D - 768 847 - -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 1470 1503 - -
Mal1g3648 2047 CDD SF2_C_SNF 1052 1187 - -
Mal1g3648 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 699 IPR014001 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 412 441 - -
Mal1g3648 2047 Pfam Helicase conserved C-terminal domain 1066 1176 IPR001650 -
Mal1g3648 2047 Gene3D - 1037 1281 IPR027417 -
Mal1g3648 2047 Pfam HSA domain 27 93 IPR014012 -
Mal1g3648 2047 MobiDBLite consensus disorder prediction 253 289 - -
Mal1g3648 2047 Coils Coil 1458 1478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3648 Mal-Chr1 68315458 68332695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3648 542 814 RAD5 or RAD16-like Gene Family AT5G43530 30.435 1.43e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g3648 SNF2_N 1.9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3648 - - aprc:113871102 3177.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3648 1 68315458 68332695 Mal1g3648 1 68315458 68332695 ECH