Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3647 ATGGACTCAACTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGTATTGCTGGTTGCCCATTTGGTGAGGGTTGTCACTTCTCGCATCATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTGAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCACTAGTCTCTAACAATGGTTCTGCACTGCAAGCTGTTAAAAGCCGCATATGTAACAAGTTTACTTCTTCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTTTTGCTCCATCAATTGATGATCACCGGCCATTGGCACCTACAACAGTTGGTCGTACGGCTGCTCGAGTTGAGGCTCCTTCTGGTCTGGGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTCCACTCGAAGCAGATATGCCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTACTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCCTGCTGCTCCTGCCGGCGGTGGCTCTGCCCCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCTTGCACATTTGGAGAAAGATGTCACTTTGCGCATGGAGCTACCGAATTGCGAAAGCTAGGAATATAA 804 0.4652 MDSTGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPLVSNNGSALQAVKSRICNKFTSSEGCKFGDKCHFAHGEWELGKPFAPSIDDHRPLAPTTVGRTAARVEAPSGLGFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTPAAPAGGGSAPPGRNIKTKLCENFAKGSCTFGERCHFAHGATELRKLGI* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3647 267 SUPERFAMILY CCCH zinc finger 71 102 IPR036855 GO:0046872
Mal1g3647 267 SMART kh_6 137 207 IPR004087 GO:0003676
Mal1g3647 267 Gene3D K Homology domain, type 1 133 232 IPR036612 GO:0003723
Mal1g3647 267 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 133 208 IPR036612 GO:0003723
Mal1g3647 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 258 IPR000571 GO:0046872
Mal1g3647 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 98 IPR000571 GO:0046872
Mal1g3647 267 Gene3D - 233 264 - -
Mal1g3647 267 Gene3D - 69 103 - -
Mal1g3647 267 CDD KH-I 140 203 - -
Mal1g3647 267 Pfam KH domain 141 203 IPR004088 GO:0003723
Mal1g3647 267 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 3 266 - -
Mal1g3647 267 ProSiteProfiles Zinc finger C3H1-type profile. 71 99 IPR000571 GO:0046872
Mal1g3647 267 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Mal1g3647 267 SMART c3hfinal6 233 259 IPR000571 GO:0046872
Mal1g3647 267 SMART c3hfinal6 73 98 IPR000571 GO:0046872
Mal1g3647 267 SUPERFAMILY CCCH zinc finger 8 34 IPR036855 GO:0046872
Mal1g3647 267 Pfam RNA-binding, Nab2-type zinc finger 12 32 - -
Mal1g3647 267 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 266 - -
Mal1g3647 267 ProSiteProfiles Zinc finger C3H1-type profile. 7 35 IPR000571 GO:0046872
Mal1g3647 267 SUPERFAMILY CCCH zinc finger 233 263 IPR036855 GO:0046872
Mal1g3647 267 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872
Mal1g3647 267 ProSiteProfiles Type-1 KH domain profile. 138 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3647 Mal-Chr1 68276812 68279419 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal1g3647 KH_1 1e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3647 - - gmx:100817463 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3647 1 68276812 68279419 Mal1g3647 1 68276812 68279419 ECH
Mal3g3624 3 113612347 113615854 Mal1g3647 1 68276812 68279419 PCT