Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3584 ATGAGGAACCAAGAATCTGGTCCGGTTCCAATGGACATTGATCTGGAACCCATTGCTATGAACTTCAATGATTCGTCTCGTCCATCTGGTTGTAGTAATCTTTATGATCCTCGTACCTGGGATCTTATTTTCGGTGTTTCTCGCAATGGAAACGTGGTTGCAGTAGCAGAAGCTAGTGAAATTAGCAAGGTTGGTGTTGCAGCGCCATTGGAAAAGAGTAAGACATCGGAGAAAAAGGAGAATGTTGAAAAGGATTATGGCAATGATAGAGGTTTCTATGATTGTAATATTTGTTTTGATTTGGCTAAGGATCCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCTTATATAGATGGTTGGATACAAGATCCTTTCCATATCGAACATTATTTGATACAAGATCCTCTAAAACTAAAGAATGTCCTGTTTGCAAGGGTGAAGTTAGTGATAAGACTGTTACTCCTATTTATGGTGGTGGGAATGATGTCGAGGTTGGTGATGAGGATTCAAGTTCCAGCACCGTGCTAATCCCTCGCAGGCCTAATGCAAGGCGTGTCTCGAAGTCGAAGGCTCCTAAACCATCTTTTAACTTTGCTTCTCGTACTCTTTTATTTCCTAGTACTTTTGCCAATGCTCTTAGTACAATTATTTCCAATCCTTTTTCCAGTTCCAATGCATATCCACTGTAA 699 0.4034 MRNQESGPVPMDIDLEPIAMNFNDSSRPSGCSNLYDPRTWDLIFGVSRNGNVVAVAEASEISKVGVAAPLEKSKTSEKKENVEKDYGNDRGFYDCNICFDLAKDPVVTCCGHLFCWPCLYRWLDTRSFPYRTLFDTRSSKTKECPVCKGEVSDKTVTPIYGGGNDVEVGDEDSSSSTVLIPRRPNARRVSKSKAPKPSFNFASRTLLFPSTFANALSTIISNPFSSSNAYPL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3584 232 CDD RING-HC_AtRMA_like 93 149 - -
Mal1g3584 232 PANTHER OS01G0830200 PROTEIN 60 192 - -
Mal1g3584 232 ProSiteProfiles Zinc finger RING-type profile. 95 148 IPR001841 -
Mal1g3584 232 ProSitePatterns Zinc finger RING-type signature. 110 119 IPR017907 -
Mal1g3584 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 160 IPR013083 -
Mal1g3584 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 60 192 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal1g3584 232 SMART ring_2 95 147 IPR001841 -
Mal1g3584 232 SUPERFAMILY RING/U-box 94 154 - -
Mal1g3584 232 Pfam Zinc finger, C3HC4 type (RING finger) 95 147 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3584 Mal-Chr1 64689901 64690599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3584 77 189 C3H Transcription Factor Family AT3G58030 53.982 1.30e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3584 K10666 - fve:101307075 142.895