Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3578 ATGGGTCGTCGTAAAATTAAAATTAAGATGCTGAAAGACCCCAACACTAGGCAGGTCATATTTTCAAAGCGTCGAATAGCCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGTGGAGCAGAAGTCGCTATTGTCGTGTTCTCTCCAGGGAACAAACCCTACTCTTTCGGTCACCCAGGAGTTGATGTTGTTGCTGCTAAGTATATCCAACAAGAGCCTAAACCAGGCGATTCCCTAAGAAACCCATCTTCTGATGCTCCCAATATTGAAAAATTAAATCTGGAACTTGCTGAGGTGTTGGCACAACTTCGAGAAGGTGAAAAGCAGGCCAAGAATTATGATGAGATTCTTAAGGAAAATGATGTGACAAAACTCTCTGAGCTTAAAGAATTGAGAGATTCTTATAAAGAGCTTCAAGATTGTGTACAATTGTGTCTTAGTGATATTGAGATATCAGAGTGTTTGATGCTTCTAGCTAAGGATCCAGTTGTGAGAATAAAAGCGAGATCATCAAGAAGGAAAAGAAGAAGAAGAAATTAA 543 0.3886 MGRRKIKIKMLKDPNTRQVIFSKRRIALFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKYIQQEPKPGDSLRNPSSDAPNIEKLNLELAEVLAQLREGEKQAKNYDEILKENDVTKLSELKELRDSYKELQDCVQLCLSDIEISECLMLLAKDPVVRIKARSSRRKRRRRN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3578 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal1g3578 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Mal1g3578 180 Coils Coil 90 110 - -
Mal1g3578 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mal1g3578 180 PANTHER MADS BOX PROTEIN 2 170 - -
Mal1g3578 180 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Mal1g3578 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g3578 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g3578 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g3578 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g3578 180 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3578 Mal-Chr1 64458797 64459339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3578 1 161 Type I MADS-box Gene Family AT2G34440 41.860 6.90e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g3578 SRF-TF 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3578 - - mtr:MTR_1g054265 254.218