Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3567 ATGGCAAATGGAATTAGCAATGGTTTTGTTGCATTGGATGAGACATCAAAGAAGGAGAATTTTGAAAAGGGTGGTGGCAGTGAAGGAAGTCATGTTTTTGATTGTAATATTTGTTTAGATTTGGCTAAGGATCCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCTTACATAAATGGCTCTATTTTAGATCGTCTCAAACTAAAGCATGTCCCGTTTGCAAGGGAGAAGTTACCGATAAGAATATTATCCCTATATATGGTGGTGACAATAATGTCAAGGTTCGTCATCAAGATTCAAGCTCTACTCTTCAAATCCCTCGCAGACCTAATGCAAGGAGTGTATCGAATGATTCCAATACGAGGCAAACAATGCAGTGGAATGCGGGGCATCTTGGAAGCATACCAGCTGAACTCGAGGCACCTTGGAGTACAGTCGAAGATTATGTCTTACCGGCTGAGTTTGTGGCTGACCTTGATGACATTTTTCCTTATTTTTCCCTGTGGCTAACCTTGTATATTTCTTTAGTGCTTTGTGTTGTTACCTCATTTTGGCTACTCCTGTAG 573 0.4049 MANGISNGFVALDETSKKENFEKGGGSEGSHVFDCNICLDLAKDPVVTCCGHLFCWPCLHKWLYFRSSQTKACPVCKGEVTDKNIIPIYGGDNNVKVRHQDSSSTLQIPRRPNARSVSNDSNTRQTMQWNAGHLGSIPAELEAPWSTVEDYVLPAEFVADLDDIFPYFSLWLTLYISLVLCVVTSFWLLL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3567 190 CDD RING-HC_AtRMA_like 33 78 - -
Mal1g3567 190 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Mal1g3567 190 ProSiteProfiles Zinc finger RING-type profile. 35 77 IPR001841 -
Mal1g3567 190 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 127 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal1g3567 190 PANTHER OS01G0830200 PROTEIN 17 127 - -
Mal1g3567 190 SUPERFAMILY RING/U-box 31 89 - -
Mal1g3567 190 SMART ring_2 35 76 IPR001841 -
Mal1g3567 190 Pfam RING-type zinc-finger 35 74 IPR027370 -
Mal1g3567 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3567 Mal-Chr1 64081920 64082492 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3567 17 125 C3H Transcription Factor Family AT3G58030 54.128 3.14e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3567 K10666 - dcr:108223586 150.599