Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3565 ATGGGAGAACAATCATCTCGTACAAATGAATGGAACATTGATTTAAATCTGCATCCGAATCCAGAACAGTTATCAGGTGTCATGGCAAATGGAACTATGAACTTGATTGATCAACCTGTTGCTAGAGTTAGTGAAATTAGCAATGGTGGTGTTGGTGGCAGTAAAGGAAGTGTTTTTGATTGTAATATTTGTTTAGATTTGGCTAAGGATCCTGTTGTTACTTATTGTGGTCATTTGTTTTGTTGGCCATGCTTACATAAATGGCTCTATTTTAGATCATCTCAAACTAAAGCATGTCCCGTTTGCAAGGGAGAAGTGACTGATAAGAATATTATCCCTATATATGGTGGTGACAATAATGTCGAGGCAAACAATACAATGGAGCGCGGGGCATCTTGGAAGCATATTGGCTGA 414 0.3841 MGEQSSRTNEWNIDLNLHPNPEQLSGVMANGTMNLIDQPVARVSEISNGGVGGSKGSVFDCNICLDLAKDPVVTYCGHLFCWPCLHKWLYFRSSQTKACPVCKGEVTDKNIIPIYGGDNNVEANNTMERGASWKHIG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3565 137 CDD RING-HC_AtRMA_like 59 104 - -
Mal1g3565 137 SUPERFAMILY RING/U-box 57 116 - -
Mal1g3565 137 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Mal1g3565 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 116 IPR013083 -
Mal1g3565 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 32 122 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal1g3565 137 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Mal1g3565 137 Pfam Zinc finger, C3HC4 type (RING finger) 61 102 IPR018957 GO:0046872
Mal1g3565 137 SMART ring_2 61 102 IPR001841 -
Mal1g3565 137 PANTHER OS01G0830200 PROTEIN 32 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3565 Mal-Chr1 64069590 64070086 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3565 2 120 C3H Transcription Factor Family AT3G58030 48.739 4.19e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3565 K10666 - sind:105162488 123.25