Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3559 ATGGAGCTTGCTTTGAGCTTAGGTGACACACCAAAATTACCTCTCTCTTTTCTTGACAAACCCACCAAAGATCCACTACCAAATTTTTTCTTAACACAACAAGGAAAATCTTTAGAGCAAGAAAAAAGAAGTTCGTCAGATCCACCTACTCAACTAGACCTTCTTCCTTTCACTCCTGTTCTTAGATCTCATCACCCTTCTTCTCACCTTCCCATTCCTTGGCTCACACAACCATGTGGACCGGTGAGGGAGCTAGACGTGAACCGTTTTCCGGCGACGACGGAAGACGCCGACGACGGTGCATCACTATCATCCCCTAGCAGTTCAGTCTCACCATTTCCAATGGATTTCAATATGAGGAATAACAATGCTGAGTATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGCAAGTGATGAAGATGAAAATGGTTCAACTCGGAAGAAACTTAGACTCTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTTAATCCTAAGCAAAAACTTGCACTGGCTAAACAGTTGAATCTTAGTGCTCGTCAAGTGGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACGTTAACAGAAGAGAATAGAAGATTGCAAAAGGAACTTCAAGAGCTTAGAGCTTTGAAAACTACTCAACCATTCTACATGCAACTTCCAGCTACCACTCTTACAATGTGTCCTTCTTGTGAACGTGTGGCTACAAACCCTTGCAACAATCAATCCAACAACAACAAGACCAGAATATTGCCATTTTCTAATGGTCAAGCCCAACCACATCAGGCCCAAGCCCATCAGATTCCTTCATGA 903 0.4186 MELALSLGDTPKLPLSFLDKPTKDPLPNFFLTQQGKSLEQEKRSSSDPPTQLDLLPFTPVLRSHHPSSHLPIPWLTQPCGPVRELDVNRFPATTEDADDGASLSSPSSSVSPFPMDFNMRNNNAEYGGRNKRENEGEAERASDEDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSARQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNPCNNQSNNNKTRILPFSNGQAQPHQAQAHQIPS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3559 300 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Mal1g3559 300 SUPERFAMILY Homeodomain-like 148 216 IPR009057 -
Mal1g3559 300 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 284 - -
Mal1g3559 300 MobiDBLite consensus disorder prediction 27 52 - -
Mal1g3559 300 PANTHER - 5 284 - -
Mal1g3559 300 MobiDBLite consensus disorder prediction 126 156 - -
Mal1g3559 300 MobiDBLite consensus disorder prediction 271 300 - -
Mal1g3559 300 ProSiteProfiles 'Homeobox' domain profile. 147 207 IPR001356 GO:0003677
Mal1g3559 300 MobiDBLite consensus disorder prediction 98 118 - -
Mal1g3559 300 MobiDBLite consensus disorder prediction 1 55 - -
Mal1g3559 300 Pfam Homeodomain 151 205 IPR001356 GO:0003677
Mal1g3559 300 ProSitePatterns 'Homeobox' domain signature. 182 205 IPR017970 GO:0000981|GO:0006355
Mal1g3559 300 Coils Coil 213 243 - -
Mal1g3559 300 Gene3D - 143 212 - -
Mal1g3559 300 SMART HOX_1 149 211 IPR001356 GO:0003677
Mal1g3559 300 MobiDBLite consensus disorder prediction 93 156 - -
Mal1g3559 300 CDD homeodomain 151 208 IPR001356 GO:0003677
Mal1g3559 300 Pfam Homeobox associated leucine zipper 207 241 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3559 Mal-Chr1 63864257 63866155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3559 72 277 Homeobox Transcription Factor Family AT5G47370 55.963 3.69e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal1g3559 Homeodomain 7.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3559 K09338 - gmx:100776113 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3559 1 63864257 63866155 Mal1g3559 1 63864257 63866155 ECH
Mal3g3646 3 113852721 113854618 Mal1g3559 1 63864257 63866155 PCT