Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3533 ATGTCTGCAACAATGAGAACAAGTTCATGGGCAGATTCTGCTGACAATGCAGCAAATGGCTCGGCTGCGCGTCCGGTCAAGCCGGCTTATGTTCCACCGCATCTTCGTAACCGATCAATGGCTGCTCCGGCTGAGCCACCTTCTTTGGTGGCTAATGATAGGGGTTTGCCTAATTGGGGTAGTTCGTCGAATTATAAGCCGGAGTTTGGGGCTGGGAGACAAGGAGGTGGAGGTGGAGGATATGGTTCTGGTGGTGGTTTTGGTGGGTTCAATAGAGGAGGAGCAGGGAATGGGAGGGAGCGCGTGGGTGGAGGAAGACGCGAGGCGAATCCGTTTGAGAATGATGTTGATGAGTCTTTTAGTGAGCAAGAGAATACCGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACAAGTGGGGAGAATGTTCCGCCTCCTGTTAATACGTTTGCGGAAATAGATTTAGGGGATGCGTTGAATCAGAACATACAGAGATGCAAGTATGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCTCTTGCAGGGAGAGATTTGATGGCTTGTGCTCAGACTGGGTCAGGAAAGACGGCTGCATTTTGCTTTCCGATTATAAGTGGAATCCTTAGGGAGCAGTATGCTCAAAGACCACGTGTCGCACGGACTGCTTATCCTCTCGCACTTATCCTGTCCCCTACTCGGGAGCTTTCTTGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCGCCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGATTAGTGGATTTGCTTGAGAGGGCCAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAAGCGGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCATCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCGACTTGCATTCATGGGGACAGAACACAACAAGAAAGAGAACAAGCATTGAGATCGTTCAAGACTGGAAACACTCCAATTCTAGTGGCGACGGATGTTGCAGCACGTGGTCTTGATATTCCACGGGTAGCACATGTGGTAAACTTTGATCTCCCGAACGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGATAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCTGCAAGGACTCCTTATGGTGGTGGCAGTAGAAACAAGCGGACTGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGGGCTCATATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGGGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1821 0.4734 MSATMRTSSWADSADNAANGSAARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLPNWGSSSNYKPEFGAGRQGGGGGGYGSGGGFGGFNRGGAGNGRERVGGGRREANPFENDVDESFSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGSRNKRTGGARFGGRDVRKEGSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3533 606 SMART helicmild6 423 504 IPR001650 -
Mal1g3533 606 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 37 577 - -
Mal1g3533 606 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 577 - -
Mal1g3533 606 MobiDBLite consensus disorder prediction 1 16 - -
Mal1g3533 606 SMART ultradead3 169 380 IPR014001 -
Mal1g3533 606 Gene3D - 107 367 IPR027417 -
Mal1g3533 606 MobiDBLite consensus disorder prediction 549 575 - -
Mal1g3533 606 CDD DEADc_DDX3_DDX4 151 371 IPR044763 GO:0003724|GO:0005524
Mal1g3533 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 365 IPR014001 -
Mal1g3533 606 Pfam DEAD/DEAH box helicase 174 354 IPR011545 GO:0003676|GO:0005524
Mal1g3533 606 MobiDBLite consensus disorder prediction 1 122 - -
Mal1g3533 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 521 IPR027417 -
Mal1g3533 606 CDD SF2_C_DEAD 377 513 - -
Mal1g3533 606 Gene3D - 368 546 IPR027417 -
Mal1g3533 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 543 IPR001650 -
Mal1g3533 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Mal1g3533 606 MobiDBLite consensus disorder prediction 559 573 - -
Mal1g3533 606 Pfam Helicase conserved C-terminal domain 389 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3533 Mal-Chr1 62150194 62155130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3533 148 536 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 2.97e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3533 K11594 - gmx:100818326 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3533 1 62150194 62155130 Mal1g3533 1 62150194 62155130 ECH