Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3418 ATGAACTACACAACCGATTCATCTGGATTCTTTGGCTCCAATGACATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGTATTCTTTTACTCATCACAACAATCACACTCACTTCCTACTTTTGCACAAGAACACAAGTTCCAAATCCTCCTAGGAGAAGAAACAACAATAACAACAACACCTCGGAATTTCTTGAACCACAACATTCAATACTTGATTTGGGATTAGATGAAGAAACAATTATGAGTTATCCAAAGATGTTATATTCTGAAGTGAAGCTTAACAAATATGATTCCACATCAACATGTTGCTCTATATGTTTAGGTGATTACAAAGGAAGTGATATGCTTAAGGTTTTACCTGATTGTGAACATTTGTTTCACCTTAAATGTATAGAACCTTGGTTAAGGATTCATCCTTCTTGTCCTCTTTGTAGAACTTCTCCAATTCCAACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTAGCAACAAGACGAGATTCATAG 516 0.3566 MNYTTDSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRTQVPNPPRRRNNNNNNTSEFLEPQHSILDLGLDEETIMSYPKMLYSEVKLNKYDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIEPWLRIHPSCPLCRTSPIPTPLSTPLAEVVPLATRRDS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3418 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Mal1g3418 171 CDD RING-H2_PA-TM-RING 104 147 - -
Mal1g3418 171 SMART ring_2 105 146 IPR001841 -
Mal1g3418 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 169 - -
Mal1g3418 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Mal1g3418 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 169 IPR045899 -
Mal1g3418 171 Pfam Ring finger domain 105 147 IPR001841 -
Mal1g3418 171 SUPERFAMILY RING/U-box 84 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3418 Mal-Chr1 58020974 58021489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3418 6 167 C3H Transcription Factor Family AT2G35910 59.877 2.46e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3418 - - gmx:100796149 238.039