Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3414 ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAATTTCTGTTGGACAGTTTTCATCTGTGACTTCAACTCCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGAGGAGATTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTTCCAACTACATAGACCAACTTGCTCCTAGTAAGAACTTAGTAAGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTTACCATATTTCCAGATGACTGTAAGATGTCAGTTGATACACCAAATCATCAAGCAACCTTATCACTGCAATCATCATTTTCTGCTGAGCCGCATAATCGTTTTGAGCTAGGGTTTAACCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATCTCGGGACGTATAATGCTTCCGCTTAGCATGACATCTGAGGACGGACCAACATACGTGAATGCTAAGCAATACCATGGAATCATCAGACGCCGGCAATCTCGTGCCAAGGCTGTGCTTCAGAATAAATTGATAAAGCGTAACAAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGGAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTGATGGAAACGGTAAAAGCGGAAGTGAAGCGAACAGAAAAACTGATGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCTGAAGTCCTGCAATCAGAAGCTGGAAATTTTAATTCATCGAAGGAGACAAATGGAGGCAGTCCAAATGTCTCGGGGTCAGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTCCAGCAGCTGGTAGACAGCTGCTGGAACCATAA 990 0.4313 MAMQPVYLKEHEGISVGQFSSVTSTPWWSNAYGSQPVYGGDSCGQMKPFSLELSNYIDQLAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSSFSAEPHNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSEDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSADGNGKSGSEANRKTDGLQLQSSGSQSSEVLQSEAGNFNSSKETNGGSPNVSGSEVTSMYSQGGLDSFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFPAAGRQLLEP* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3414 329 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Mal1g3414 329 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Mal1g3414 329 MobiDBLite consensus disorder prediction 222 280 - -
Mal1g3414 329 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Mal1g3414 329 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Mal1g3414 329 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 323 - -
Mal1g3414 329 Gene3D - 160 220 - -
Mal1g3414 329 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 323 IPR001289 GO:0003700|GO:0006355
Mal1g3414 329 MobiDBLite consensus disorder prediction 207 280 - -
Mal1g3414 329 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3414 Mal-Chr1 57986944 57989469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3414 1 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.695 4.18e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mal1g3414 CBFB_NFYA 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3414 K08064 - gmx:100808195 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4481 3 124643907 124646563 Mal1g3414 1 57986944 57989469 PCT