Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3413 ATGGCAGGTGCAGCCACAGCTTCCTTCCCTATCTACCACAGACTCTTTAACCTTTCCTTTACTAACCATTCTTCCAATTCACTCATCACCCTTAACTTCCCACACAGAACAAGAATAACCTTATCTCCAAAACCCTTCAATCTAAACCCCCAATTATTCAACCCTCTTCATCCACCTTCATTTTCCTTTCATCAATTCCAATTCACTGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCCTGAACCGGAAACTGAAACCTTACAAAATTCAGACCCAAAACTGAGACTCTTTGTTGGAAACTTGCCTTTTTCATTGTCTTCTTCCCAATTGGCTCAACTCTTTGGACAAGCTGGAAATGTTGTGTCTGTGGAGATTGTGTATGATGACATCACAGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGCGAGGAGGATGCTGAAGAAGCAATTCGAGTGTTCGATGGCACTAAATTTGGAGGTAGGGCTATTAAGGTAAACTTCCCACAAGTGCCCAAAGTAGGCAAAAGGGTACTCATGGGCTCAAACTATAGAGGATATGTAGACAGCCCTCACAAGATATATGCTGGAAATCTTGGTTGGGATATGACTTCCAAGGATCTTAGAGAAGCATTTGCTGAGCAACCAGGCTTACTGAGTGCCAAGGTCGTCTACGAAAGGAACAACGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAATTTGGTTGTGGATAACAAGAAGCCTTCATCTCCTCCTGTAATTGATCAAAATAAAGGAACTAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGAAAATGA 903 0.4208 MAGAATASFPIYHRLFNLSFTNHSSNSLITLNFPHRTRITLSPKPFNLNPQLFNPLHPPSFSFHQFQFTEEEEEEEEEDPEPETETLQNSDPKLRLFVGNLPFSLSSSQLAQLFGQAGNVVSVEIVYDDITDRSRGFAFVTMGSEEDAEEAIRVFDGTKFGGRAIKVNFPQVPKVGKRVLMGSNYRGYVDSPHKIYAGNLGWDMTSKDLREAFAEQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLNLVVDNKKPSSPPVIDQNKGTNVDSLEMLFGIRK* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3413 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Mal1g3413 300 SUPERFAMILY RNA-binding domain, RBD 82 180 IPR035979 GO:0003676
Mal1g3413 300 SUPERFAMILY RNA-binding domain, RBD 190 276 IPR035979 GO:0003676
Mal1g3413 300 Gene3D - 64 178 IPR012677 -
Mal1g3413 300 Gene3D - 183 277 IPR012677 -
Mal1g3413 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Mal1g3413 300 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 280 - -
Mal1g3413 300 SMART rrm1_1 194 267 IPR000504 GO:0003723
Mal1g3413 300 SMART rrm1_1 95 168 IPR000504 GO:0003723
Mal1g3413 300 PANTHER OS02G0815200 PROTEIN 1 280 - -
Mal1g3413 300 CDD RRM_HP0827_like 95 171 - -
Mal1g3413 300 MobiDBLite consensus disorder prediction 69 85 - -
Mal1g3413 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Mal1g3413 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Mal1g3413 300 SMART rrm2_1 95 168 IPR003954 GO:0003676
Mal1g3413 300 MobiDBLite consensus disorder prediction 68 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3413 Mal-Chr1 57981819 57985682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3413 96 269 Eukaryotic Initiation Factors Gene Family AT1G49760 31.746 2.12e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3413 - - gmx:100814852 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3413 1 57981819 57985682 Mal1g3413 1 57981819 57985682 ECH