Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g3411 | ATGAACAATTTATTCACCGGTTCATTTTCTCGCTTCCGTAGCGAAGAAGTTTCACCGGACCGCCACCACGTCATAGAGATGACACACGGTGGCTCAGCCGGAGCCACCGGAGGAGCAGGAGGTAGAATAAACCTCGACAAATTCTTCGACGACGTCGAAGGAGTAAAAGACGATCTAAAAGAGCTTGAAGCAATTCACCAAAGACTTTCAAAGACTAACGAACAAACCAAAACGGTTCACGATGCTAAAGGAGTGAAGGAGCTTCGTTCTCGTATGGACGAAGAAGTTTCTGTAGCGTTGAAAAAGGCGAAGATGGTGAAATTGAAGTTGGAAGCGTTGGAACGATCTAATGCGGCGAACCGGAATTTGGAAGGGTGTGGACCGGGTTCGTCGTCGGACCGGACGAGGAGTTCGGTGGTGAATGGGTTGAAGAAGAAGTTGAAGGATTCTATGGAGAGTTTTAACGGTTTGCGTGAAATTATTTCGACGGAGTATAGAGAAACTGTTCAACGGCGTTATTTTACTGTTACTGGAGAGAATCCTGATGATAAGACTCTTGATCTATTGATTTCTACTGGTGAAAGTGAGACCTTTCTTCAGAAAGCAATTCAAGAACAAGGCAGGGGAAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGACTTGGAGAAGAGTCTACTGGAGTTGCACCAAGTGTTCCTCGACATGACAGTTATGGTACAATTTCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCGAGGGCGAGCTCATTTGTGCACACTGGAACCAATGAGTTACAAACTGCAAGGAAGCACCAGAAAAACACAAGGAAATGGACCTGTTATTGTATTATACTTCTTTTGATTATTGTCTTGATTGTGGTTCTCGCCACTGTGAAACCGTGGGAACATAATGATAGTGGCGGTAATCAGCCTGCTCCAGCGCAGACTCCCCCGTCTCCTCCTCCTCCTCCGGCTGGTACTTAA | 1011 | 0.458 | MNNLFTGSFSRFRSEEVSPDRHHVIEMTHGGSAGATGGAGGRINLDKFFDDVEGVKDDLKELEAIHQRLSKTNEQTKTVHDAKGVKELRSRMDEEVSVALKKAKMVKLKLEALERSNAANRNLEGCGPGSSSDRTRSSVVNGLKKKLKDSMESFNGLREIISTEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLEKSLLELHQVFLDMTVMVQFQGEQLDDIESHVARASSFVHTGTNELQTARKHQKNTRKWTCYCIILLLIIVLIVVLATVKPWEHNDSGGNQPAPAQTPPSPPPPPAGT* | 337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g3411 | 336 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 7 | 315 | - | - | |
| Mal1g3411 | 336 | SMART | tSNARE_6 | 210 | 277 | IPR000727 | - | |
| Mal1g3411 | 336 | MobiDBLite | consensus disorder prediction | 322 | 336 | - | - | |
| Mal1g3411 | 336 | SMART | SynN_4 | 40 | 166 | IPR006011 | GO:0016020 | |
| Mal1g3411 | 336 | Coils | Coil | 52 | 79 | - | - | |
| Mal1g3411 | 336 | CDD | SNARE_syntaxin1-like | 214 | 276 | - | - | |
| Mal1g3411 | 336 | SUPERFAMILY | t-snare proteins | 44 | 270 | IPR010989 | GO:0016020|GO:0016192 | |
| Mal1g3411 | 336 | CDD | SynN | 45 | 202 | IPR006011 | GO:0016020 | |
| Mal1g3411 | 336 | ProSitePatterns | Syntaxin / epimorphin family signature. | 221 | 260 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Mal1g3411 | 336 | MobiDBLite | consensus disorder prediction | 313 | 336 | - | - | |
| Mal1g3411 | 336 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 215 | 277 | IPR000727 | - | |
| Mal1g3411 | 336 | Pfam | SNARE domain | 251 | 303 | IPR000727 | - | |
| Mal1g3411 | 336 | Gene3D | - | 212 | 308 | - | - | |
| Mal1g3411 | 336 | PANTHER | SYNTAXIN | 7 | 315 | IPR045242 | - | |
| Mal1g3411 | 336 | Gene3D | - | 43 | 175 | - | - | |
| Mal1g3411 | 336 | Pfam | Syntaxin | 47 | 250 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g3411 | Mal-Chr1 | 57973226 | 57975201 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g3411 | 33 | 330 | SNARE and Associated Proteins | AT3G11820 | 69.579 | 6.02e-145 | 410 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g3411 | K08486 | - | gmx:100809258 | 481.1 |