Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3389 ATGAATCAAGATATCGAAGTTTCACCATTTTATCTCTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGTTATTTTCAGCTAACAACAAAACATGTCCTGTCACAAAACAACAACTCTCACATGACAATGATTTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCTTGGTGCACCATAAATTCTTCTTATGGTGTGGAAAGAATTCCAACTCCAAAACCACCAACAACAAAAACCCTTATAGAAAAACACCTCAAAGAAGCTTCAGATTCACCTCATTTGCTTATTCAATCCCTCAAAAAACTCAAAACTATTGCTTCCGAGAGTGAAACAAATCGACGATGTATCGAATCGGCTGGCGCGGTCGAGTTCTTAGCATCAGTAGTAATAAACAATACAAATTCTTCATCTTCATGTTCAACAACAGAATCAATTGAAGCTACCTTTGAATTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTGATGAGATTATTACAAAAGGGTAACTACGATTCAAGAACATACGCAGTTTTTCTGTTGAATTCTATGTCAAAAGTTGCTGATCCATCAAAACTAGCAAATCTAAAAACCGAGTTTTTCGTCGAATTAGTTCAACTTCTGAAAGATCAGATATCAAAAAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTCATCGAATTCGGAAGAAACAGGGTAAAAGCGATTGAATCAGGTTGTGTTTCAGTTTTAATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTTTTAAGCCATGCTTGTGGTTTAGCTATTGTTTCAAAGAAGATTCTAAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTTTCTGTTTCAAGATTTTCTGCAACACAATATGTTGTTCAAGAAATGTTGCAAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGGGAGATTCTTAAATTACATGCAAAATCTTGGATGAGTTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTGA 1314 0.3546 MNQDIEVSPFYLCPISLQLMKDPVTVSTGITYDRESIEKWLFSANNKTCPVTKQQLSHDNDFIILTPNHTLRRLIQAWCTINSSYGVERIPTPKPPTTKTLIEKHLKEASDSPHLLIQSLKKLKTIASESETNRRCIESAGAVEFLASVVINNTNSSSSCSTTESIEATFEFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEFLDSLMRLLQKGNYDSRTYAVFLLNSMSKVADPSKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQLIEFGRNRVKAIESGCVSVLIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHACGLAIVSKKILRVSTMANDRAVRILLSVSRFSATQYVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAREILKLHAKSWMSSHCIPFNLLASYPTSG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3389 437 ProSiteProfiles U-box domain profile. 6 85 IPR003613 GO:0004842|GO:0016567
Mal1g3389 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 434 - -
Mal1g3389 437 Pfam U-box domain 8 82 IPR003613 GO:0004842|GO:0016567
Mal1g3389 437 PANTHER WDSAM1 PROTEIN 3 434 IPR045185 GO:0061630
Mal1g3389 437 CDD RING-Ubox_PUB 11 54 IPR045210 -
Mal1g3389 437 SUPERFAMILY ARM repeat 110 402 IPR016024 -
Mal1g3389 437 Gene3D - 95 423 IPR011989 -
Mal1g3389 437 SUPERFAMILY RING/U-box 5 87 - -
Mal1g3389 437 SMART Ubox_2 10 78 IPR003613 GO:0004842|GO:0016567
Mal1g3389 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3389 Mal-Chr1 57098293 57099606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3389 1 434 U-box Gene Family AT3G52450 53.425 5.30e-161 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3389 - - gmx:100809839 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3389 1 57098293 57099606 Mal1g3389 1 57098293 57099606 ECH
Mal1g3389 1 57098293 57099606 Mal3g4472 3 124560596 124561858 PCT