Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3385 ATGGATGAAATCGAAGTTCCACAATATTTCATATGTCCAATATCACTCCAAATAATGAAAGATCCTGTTACTGCTATAACAGGCATAACATATGATCGAGACAGCATTGAACATTGGTTATTCACAAACAAAAACACAACATGTCCTGTCACAAAACAACCTCTTCCATTAGATTCCGATTTAACACCAAATCATACACTTCGTCGTTTGATTCAATCTTGGTGCACACAAAATGCTTCACTTGGTATTGATAGAATTCCAACACCAAAACCACCACTCACAAAAATTCATGTTCAAAAGCTTCTCAAAGGAATGAAAGATTCTAAAGTTCAGCTCAAGAGTTTAATGCAATTGGAATTGCTTGCCGCGGAGAAAGAGAGCAATAGAAAGATTTTGTTGGAAAATGGTGTGCCGAAAGCGATGATTATGTTCATAGTTGATTGTTACAAAAAAGGCGAAATTTATGAAGGTATTGAAGAAGCTCTTGGTTTTTTACAATTTTTTAAGGTTCCTACAGAAGAAGTGAAGAATCTTCTATTTGAAAATAATCAAATATTGGATTCTTTAACATGGATTTTAGTTTCAGAGATGAAAAACTCTGTTACCGTGAAATCTCACGCGGTTTTGGTGCTTAAAAAATTCATAAATAAATGTGATTCCAATTTTTTAGAGAGGCTTAAACCTGAATTCTTTGAAAGAATTGTGAAAGTTTTAAGAAATGGTGTAATAACACAACAAGGTTTATGTTCTGCTTTACATATTTTACTATGTTGTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGCTGGTGCAATTTATGAATTGATAGAGATTGAATTAATGGCAATACATGAGAAGAGAATCACAGAACTCACTTTTGGAATTTTGTTTCATTTGTGTTCTTGTGCTAATGGGAGATTTCAGTTTTTGAGTCATGAAGGTTCAATTGCTATGTTGACTGAAAGAATCTTGAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTTTCTTTGATATCTAAATTTTCAGCTACTAAGATGGTTTTGGATGAGATGTTAAAGGTTGGAACTGTTTCTAAGCTTTTTGTTTTGCTTCAAGCTGATCATGCTAAGTATTTGAAAGATAAAGTGATGGAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTCAAACATCTTTCTATGCTAGCTTTCATAGGTGA 1230 0.3341 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFTNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKIHVQKLLKGMKDSKVQLKSLMQLELLAAEKESNRKILLENGVPKAMIMFIVDCYKKGEIYEGIEEALGFLQFFKVPTEEVKNLLFENNQILDSLTWILVSEMKNSVTVKSHAVLVLKKFINKCDSNFLERLKPEFFERIVKVLRNGVITQQGLCSALHILLCCCPLGRNRLMMVEAGAIYELIEIELMAIHEKRITELTFGILFHLCSCANGRFQFLSHEGSIAMLTERILKVSMTVDDRAVFILSLISKFSATKMVLDEMLKVGTVSKLFVLLQADHAKYLKDKVMEIFKAHSEVWKNSPCFPQTSFYASFHR* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3385 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 403 - -
Mal1g3385 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Mal1g3385 409 SUPERFAMILY ARM repeat 100 375 IPR016024 -
Mal1g3385 409 SUPERFAMILY RING/U-box 3 83 - -
Mal1g3385 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Mal1g3385 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Mal1g3385 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mal1g3385 409 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Mal1g3385 409 Coils Coil 115 135 - -
Mal1g3385 409 CDD RING-Ubox_PUB 10 53 IPR045210 -
Mal1g3385 409 Gene3D - 96 391 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3385 Mal-Chr1 56955986 56957215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3385 2 398 U-box Gene Family AT3G11840 42.141 1.52e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3385 - - gmx:100798446 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3385 1 56955986 56957215 Mal1g3385 1 56955986 56957215 ECH
Mal3g4472 3 124560596 124561858 Mal1g3385 1 56955986 56957215 PCT