Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3378 ATGGTGAGGATAATGCCTTTTTATAGTAGGAGTCGGAAGATTGCAAAATGCTTGTCTTGCGATCTATGCAACCAACTTCTGACGGATGCCACTAAAATCATTATCTGCTTTCATACTTTTTGCAAAAAGTGCATTTATTCTAAATTAGAAGAAGAAGAATTGGATTGGTGTCCAGTATGTCGTGTTCATTTAGGGATGGATCCTTTTACAAAACTGAGGCCGGACTTTAATTTGCAAGATACTAGAAACTGCTTATTTCCTGTTGGAAAAGAGGAGGAGGCACTGAAATACCTCCCAGCAGACCTAATGAGAACAAGTGGGCAGGAAGCTTCTGTAAAGCAAAAGAACATGAAGAAACAATTAAGCTTCAAGATGCTGAGGAGACTTCTGATAGTAGGTTTTCTTATTTGA 411 0.3844 MVRIMPFYSRSRKIAKCLSCDLCNQLLTDATKIIICFHTFCKKCIYSKLEEEELDWCPVCRVHLGMDPFTKLRPDFNLQDTRNCLFPVGKEEEALKYLPADLMRTSGQEASVKQKNMKKQLSFKMLRRLLIVGFLI* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3378 136 SUPERFAMILY RING/U-box 14 74 - -
Mal1g3378 136 SMART ring_2 20 60 IPR001841 -
Mal1g3378 136 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 13 114 IPR044807 GO:0004842
Mal1g3378 136 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Mal1g3378 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 125 IPR013083 -
Mal1g3378 136 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Mal1g3378 136 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 13 114 - -
Mal1g3378 136 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3378 Mal-Chr1 56737084 56739565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3378 14 93 C3H Transcription Factor Family AT2G30580 52.500 2.94e-25 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3378 K16277 K11488 mtr:MTR_1g057690 192.586