Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3348 ATGTCCGGTAACGCTGGAGCTTCCGACCGTGGCTCGCCGATGCCGAAGGAGACTGCTGCCGGAGCACCGATTCGGCCGCCGTTGAAGCGTCATCTGGCGTTTGTGTCGACGAAGCCACCGTTTGCACCGACTGATGAGTACCACAGTTTCGCCGCTGTTGATTCTAGGAAAGTCGCCGATCATGTGAATGAAGCCGTTATTGTTAGATCTCCCATCATAAAGCGGAAGAATGGAATGAATGAAAGTGAAGGAGACTCACAAAAGTCAAGTAACAGTCCTGGATACACTAATGTAATGAATAGCCCCTTTAAAACTCCTGTGTCTGCAAAAGGGGGAAGGGCAAACAAGTCAAGGGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTCCGCTTCCCCGCTTACTCCTGCTGGTAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCCATTTGATCAAGCGTGCTGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGCAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATATCAAGAACAGAATATATTGGAAAGGAATTGAATCTTCTACACCTGGTACTGTGGATGGTGATATCTCCTTGCTTAAGTCAGAAGTTGAAAACCTTTCTCTGGAAGAGCAGAGACTAGATGATCAGATAAGGGAAATGCAAGAAAGATTGAGAAGTTTGAGTGAAGATGAAAACAACCAGAAGTTCCTTTTTGTGACCGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCGCATGGAACCACCTTGGAAGTTCCTGATCCTGAGGAAGCCGTTGAAGAACTACAGCGGAGATATAGAATCATTTTAAGGAGCACAATGGGTCCAATTGATGTCTACCTTATCAGTCAGTTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCACGATCTTCCCTCTTGCTTCAAGTTCAGGGTCTAATGAGCAACAAGTGACAGAATTGGTTCCCGCTGAATGCAGTGGAAAAGAACTTGAACCTCAAGCTCTGCTCTCTTCTCAGACATACTCTGATCTAAATGCTTCGCAGGAGTTTGCTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTGTCAGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGACTCTAATGTTGATTGGAGTGCAGTGGACATGCTTCATCCTGACTTTGAAATGCTCGCGAGGCCACAAACTCCATCGCCTGGACTTGTTGAAGCACCATCGACTGTAGCTAACCCAAATCAGAGGTGA 1407 0.4506 MSGNAGASDRGSPMPKETAAGAPIRPPLKRHLAFVSTKPPFAPTDEYHSFAAVDSRKVADHVNEAVIVRSPIIKRKNGMNESEGDSQKSSNSPGYTNVMNSPFKTPVSAKGGRANKSRVSKEGRSCPPTPISNAGSASPLTPAGSCRYDSSLGLLTKKFIHLIKRAEDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKNIKNRIYWKGIESSTPGTVDGDISLLKSEVENLSLEEQRLDDQIREMQERLRSLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVEELQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPTIFPLASSSGSNEQQVTELVPAECSGKELEPQALLSSQTYSDLNASQEFAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSNVDWSAVDMLHPDFEMLARPQTPSPGLVEAPSTVANPNQR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3348 468 Gene3D - 220 329 - -
Mal1g3348 468 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Mal1g3348 468 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Mal1g3348 468 Gene3D - 141 214 IPR036388 -
Mal1g3348 468 MobiDBLite consensus disorder prediction 83 104 - -
Mal1g3348 468 MobiDBLite consensus disorder prediction 76 142 - -
Mal1g3348 468 Coils Coil 163 183 - -
Mal1g3348 468 MobiDBLite consensus disorder prediction 448 468 - -
Mal1g3348 468 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Mal1g3348 468 Coils Coil 225 259 - -
Mal1g3348 468 MobiDBLite consensus disorder prediction 454 468 - -
Mal1g3348 468 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Mal1g3348 468 CDD E2F_DD 225 329 IPR032198 GO:0046983
Mal1g3348 468 PANTHER TRANSCRIPTION FACTOR E2FB 25 453 - -
Mal1g3348 468 MobiDBLite consensus disorder prediction 126 142 - -
Mal1g3348 468 MobiDBLite consensus disorder prediction 1 26 - -
Mal1g3348 468 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Mal1g3348 468 PANTHER TRANSCRIPTION FACTOR E2F 25 453 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3348 Mal-Chr1 55515941 55521492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3348 23 462 E2F-DP Transcription Factor Family AT2G36010 56.867 3.92e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mal1g3348 E2F_CC-MB 7.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3348 K06620 - gmx:100811762 736.102