Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3331 ATGTCGCTGTATATCGGTAAATTATCTGAACGCGTTCGGATTGATGAACTTGAGAGAGTTTTTCGTAGATTTGGGCGCTGTAATGTTAATGTGAAAAGAGAAGGTTACGGTTTTGTGGTGTTTGACGTCCGTTCGGATGCGGAGAAAGCTTTGAGAGCGTTGAAAGGTAGAAAGATATGTGGGGAGTTGTTGAATTTGATGTGGTCCAATCAACAACCCAAGTCACATTTTACGAAATTTGATAGGGTTGGTGAAAGAAATACCTATGACTTGCAAGGTAGGAGGAGTTCTGACAGATTGGGTGACAAAGGAAGGAAAGAGGGTTTTGATGGATGGAGGAAATGGAATCACAATATGGGTTTTGTTGAAAGGGGTAAAACTGTTGACGTGTCCTGTGAAGAGGGGGAATTTCGTCCAGATTGTTTTAAGGATTGTGATGGACAAGAAAAAGATCGCGGAGGAGATTTTCCAGATGAAGGTGGCCGAGTCGTTCCTAACCAGGACAATGCTAGATGGGCCATTCCAACTCATGACCCAGAAACTAACTATGGGAATGGGAATACTTTGGAATTTGATCGCTATGAACCTTCCCGTGGCTATGGCAGAAAGAATGACAAAGAAGATTACTCTAGTGGTTCTCCTGTAGCAAATTCCCAACAGAATGCAGGCAGAGCACGGATTGGTGAGGAAATCTCGAATCTCCCAAACGGTTCAAAATTACAGCATACTGGTTATAGATGTGGAGAAGCAGGTCATAAAATGAAAAATTGCAGGAAAGAACACTCTTTACGGAGAAAATATAACAGATTGGATGATGAGCATGCTGATAAAATAGACAAAAAGCGTAGAGTTGAAGATGATATTGAGCCTGGATGGGGTTCCTGGGTGAGTCCACAGTCAAATGGAGATGCTTTATTGATGAGCCACCAGAGAGATAAGTGGAGGGTGTCTAGTTCAGAACTTGATTGTGCACCAGTGAGAAATGAATCATCCCCTGTAACAAAGGACACTGATAGATATCGAAGAAAGGAGTATGGAGTAAAAAAGCAAAGCAGAAATGAAACAGAATCACCTAAAAGATCTAGGGAGAAAATATCAAGGCAATCAGTCTCATCCTCTTTGCTTTCAGATTACTCTGCATTTCACTCACTGACACATTCTCAATCACCCAAATCATTGCCTAGGTCTACTTCATATTCTAGATCAAGATCAGTGTCTTCTAGAGCACATTCTCCATCTTCAAAGGTAATGTCTTCCTCAAAATCTCAGAATTGTAGAGGAAAAAAAGTACATCCGAATAGGTCGAGCTCCTCTACATCTTTGTATGTATCACCCAATCAGCCTTTACCGTCATCTTCAAATAAAATCCAGTTTAGTTCAAAAAGCTCATCCACCAATGGGGCTGCACTTGAGTCTGTGGATCATTGGGTTACTCGTGGACAAGGGATTGGCAGTACAATGGAATTGAAGAATTTACAATCCAAGGACTCAGGTATTGCTATAAATGGACAAGCTACAGTGTCCACTACACTGGTGGATGCGACCAAAAAGGACCAACATGTGCAGGAGGACAACAATGAGAGTTTTACTAAACCAATTATTGCACAGAATTTGTCTCCCAGGAGGGTAAAACGGGAAGAGGGCTTTCAGCATCCCAGAACACTAATGTCAGATGATATTCCAACTGAAATTCAGAAGCCAACTCTGGAAACTCATATTAATCCCCGTTCTGACTGTTCAACCATCATATCTACAGAGCAAATGTGCATGGTTCTTAATAATAGTGGCCTGGAACTTCCGAAAGGCCATGACATAAACTTAACAACGGATGACTTCTTTGGTGCTGCTCGGTTGTGGCCTTGGTACATTATTTATTACCGTAGGTTGAAGAAGGGACCAATTTCAATTGAGAACTATGCCAGGCGCGTTGCTCAGAATCAGGAATTCAGTATTGTTGATAAGTACATACGAAGCAGTAGTGGATGGGGAGAATTCAGTCTCGAGAAGTCTTGA 2013 0.4178 MSLYIGKLSERVRIDELERVFRRFGRCNVNVKREGYGFVVFDVRSDAEKALRALKGRKICGELLNLMWSNQQPKSHFTKFDRVGERNTYDLQGRRSSDRLGDKGRKEGFDGWRKWNHNMGFVERGKTVDVSCEEGEFRPDCFKDCDGQEKDRGGDFPDEGGRVVPNQDNARWAIPTHDPETNYGNGNTLEFDRYEPSRGYGRKNDKEDYSSGSPVANSQQNAGRARIGEEISNLPNGSKLQHTGYRCGEAGHKMKNCRKEHSLRRKYNRLDDEHADKIDKKRRVEDDIEPGWGSWVSPQSNGDALLMSHQRDKWRVSSSELDCAPVRNESSPVTKDTDRYRRKEYGVKKQSRNETESPKRSREKISRQSVSSSLLSDYSAFHSLTHSQSPKSLPRSTSYSRSRSVSSRAHSPSSKVMSSSKSQNCRGKKVHPNRSSSSTSLYVSPNQPLPSSSNKIQFSSKSSSTNGAALESVDHWVTRGQGIGSTMELKNLQSKDSGIAINGQATVSTTLVDATKKDQHVQEDNNESFTKPIIAQNLSPRRVKREEGFQHPRTLMSDDIPTEIQKPTLETHINPRSDCSTIISTEQMCMVLNNSGLELPKGHDINLTTDDFFGAARLWPWYIIYYRRLKKGPISIENYARRVAQNQEFSIVDKYIRSSSGWGEFSLEKS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3331 670 SUPERFAMILY RNA-binding domain, RBD 2 96 IPR035979 GO:0003676
Mal1g3331 670 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Mal1g3331 670 MobiDBLite consensus disorder prediction 143 223 - -
Mal1g3331 670 MobiDBLite consensus disorder prediction 195 209 - -
Mal1g3331 670 MobiDBLite consensus disorder prediction 384 468 - -
Mal1g3331 670 MobiDBLite consensus disorder prediction 325 369 - -
Mal1g3331 670 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 62 IPR000504 GO:0003723
Mal1g3331 670 PANTHER OS02G0536400 PROTEIN 3 666 - -
Mal1g3331 670 MobiDBLite consensus disorder prediction 332 366 - -
Mal1g3331 670 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 666 - -
Mal1g3331 670 SMART rrm1_1 2 67 IPR000504 GO:0003723
Mal1g3331 670 Gene3D - 1 77 IPR012677 -
Mal1g3331 670 MobiDBLite consensus disorder prediction 143 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3331 2 80 Eukaryotic Initiation Factors Gene Family AT5G06000 34.483 6.40e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3331 - - aprc:113872147 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3331 1 55224629 55226641 Mal1g3331 1 55224629 55226641 ECH