Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3321 ATGGATCTTCCAGAAACCTCACTTTGGTGGACTCAACAACATCAACACCAACACCACCAACAACAACCTATGCTATTACTTGAACCAATCCAAAACACTTCTTGGTCTCTTCACCACCACCAACCTCCATGGTTCAATTCTCAAATCCATGAAAATTCATCCCATTACAACCTCAAAAACATCGAAGATGAAGAATTATTACAAAACAACAACGACGACACCACCGTCGTAAAACCCGAAGACGAAAAAGAACCAATGTTTGAGAAACCATTAACTCCTTCTGACGTAGGAAAACTCAACCGTCTTGTAATCCCAAAACAATACGCAGAAAGATACTTTCCACTCGGCGGAGCTGACTCCGCCGAGTGCAAAGGACTTTTACTTAGTTTCGAGGATGAATCAGGAAAGTGCTGGCGGTTCCGCTACTCCTACTGGAATAGTAGTCAAAGCTACGTCTTGACTAAAGGTTGGAGTCGTTATGTTAAAGATAAACGACTCGATGCTGGTGATGTCGTTCTGTTTGAACGACATCGTGTTGATAGTCAAAGACTATTTATTAACTGGAGGAGGAGGAGTGGGGATGATCATTCGGCGTATATTAGCAGAGGGGTACATGGTAAGGGTAGTGATGGGAAGAATGAGGTTGTTAATGGTGTTGGGTGGTCCAGAGGGTTCTATTCTGCGCATGTTCCTTATCCTGCGCATCATAATCAAGTCTTCCCATACCAACATGATCAATGTCTTAATGCAGGTAGAGGGTCCCAAAGTCAGAACCAAAGGACGAAACCGGTGGGAAATAGTTCAAGTTCAACTTCTAGTTCAAGGGTACTTAGGTTATTTGGGGTCAACATGGAATGCCAACCTGAACAAAATGATTCAACACCTCAATGCTCTTATGATAGTAACAATATGGCACTAACACAAGGTACTCTAGATACCAATAATCTCTATCAATATCATCAACCTTCTTCTTCTCATTCTAATTCCAATTCTCACCCTCATGTACGTCACCAACCATATTACTACTAG 1029 0.4208 MDLPETSLWWTQQHQHQHHQQQPMLLLEPIQNTSWSLHHHQPPWFNSQIHENSSHYNLKNIEDEELLQNNNDDTTVVKPEDEKEPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLGGADSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRSGDDHSAYISRGVHGKGSDGKNEVVNGVGWSRGFYSAHVPYPAHHNQVFPYQHDQCLNAGRGSQSQNQRTKPVGNSSSSTSSSRVLRLFGVNMECQPEQNDSTPQCSYDSNNMALTQGTLDTNNLYQYHQPSSSHSNSNSHPHVRHQPYYY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3321 342 MobiDBLite consensus disorder prediction 248 273 - -
Mal1g3321 342 SMART B3_2 87 192 IPR003340 GO:0003677
Mal1g3321 342 SUPERFAMILY DNA-binding pseudobarrel domain 82 195 IPR015300 -
Mal1g3321 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 11 303 - -
Mal1g3321 342 Gene3D - 76 201 IPR015300 -
Mal1g3321 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 303 IPR044800 GO:0003700
Mal1g3321 342 MobiDBLite consensus disorder prediction 67 91 - -
Mal1g3321 342 MobiDBLite consensus disorder prediction 316 335 - -
Mal1g3321 342 Pfam B3 DNA binding domain 87 192 IPR003340 GO:0003677
Mal1g3321 342 MobiDBLite consensus disorder prediction 75 89 - -
Mal1g3321 342 CDD B3_DNA 85 182 IPR003340 GO:0003677
Mal1g3321 342 ProSiteProfiles B3 DNA-binding domain profile. 87 192 IPR003340 GO:0003677
Mal1g3321 342 MobiDBLite consensus disorder prediction 316 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3321 Mal-Chr1 54732421 54734574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3321 80 292 RAV Transcription Factor Family AT5G06250 54.054 4.11e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g3321 B3 3.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3321 - - cam:101511950 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3321 1 54732421 54734574 Mal1g3321 1 54732421 54734574 ECH
Mal3g4419 3 123750499 123752963 Mal1g3321 1 54732421 54734574 PCT