Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3240 ATGGAAGACCACCATAACAATCATGGTCATCAACATCACCATCATCACCATCAACAACAACAATATGATCTAAGACAACTAGTAAACGGAACAAGGTCAACCCATTTCCCCTCTCTTCCGACTCCGGCTACCGATGAGTTTTTCTCCGGTCACCGGAATCTGACAGCTTTGTTAACAACCACACATCAAAACCAACAACAGTATGAGATGATGATGCTAGGTCGTGGAGTAGTTCTTGAAGATTTCACTACTCATGTACCACCACCTTCAACAACAACAACAATAGCAGCAACAACCACCACTGCTAGTGCTAGTGTTTCAACTCCTGAGACCACAGGATATATCGGTGGAGATGCATCCACTGGAAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCCTTATGGGATGAAGTCTCTAGGATAATGTCTGAAGAACATGGATATCAAAGGAGTGGAAAAAAGTGCAGAGAAAAATTTGAGAACCTGTACAAATATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGTAAGCATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGACACTAATTTTGTCAACAACAATTTCCATTTCCAACAAACAAGTACTAGCCAAAACCCTCACAATGATCATAGTCTCAGTCTCACTACTAACTCAACTGATTTTGAAATCGACACGTCGTCATCTGATGATGGCAATGATGAGAGGGGAAAGAGGAAGAGTAGTGGAAGAAGAAGTTGGAAGGTGAAGATAAAAGAGTTCATTGATGCACAAATGAAGAAGCTTGTGGAGAAGCAAGAGGAATGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGTGAAAAGAGTAGAAAAGGAGCAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAAAATTTAGGTGGTAGAGAAATGGTTAAGGTTGAAGAAGCTCATGATCATAAGGGTGTAAATGTAATAACTAGAGGAGAGATTCAAAATCCAAATGAAGATGGGAGTGAAATCTTGAATAGTACTTTGAGAGGTGTTGATAACTATCCAAGGGATGATACAAAAGAAGGAAACAAGAAGAGAAAGGAGAGTTTTTACTTCAATAATAATGAACAATGTTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGAGGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCCTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAACTTTGGCTTGAAGATCAGTAAAGTAAACCAAAATCATTAA 1506 0.3891 MEDHHNNHGHQHHHHHHQQQQYDLRQLVNGTRSTHFPSLPTPATDEFFSGHRNLTALLTTTHQNQQQYEMMMLGRGVVLEDFTTHVPPPSTTTTIAATTTTASASVSTPETTGYIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPDTNFVNNNFHFQQTSTSQNPHNDHSLSLTTNSTDFEIDTSSSDDGNDERGKRKSSGRRSWKVKIKEFIDAQMKKLVEKQEEWLSKLVKTLEDKEKERVLREEEWRKQEVKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMVKVEEAHDHKGVNVITRGEIQNPNEDGSEILNSTLRGVDNYPRDDTKEGNKKRKESFYFNNNEQCSMYNQGSGYCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKISKVNQNH* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3240 501 PANTHER - 29 399 - -
Mal1g3240 501 PANTHER - 410 491 - -
Mal1g3240 501 MobiDBLite consensus disorder prediction 100 115 - -
Mal1g3240 501 Gene3D - 124 186 - -
Mal1g3240 501 MobiDBLite consensus disorder prediction 100 121 - -
Mal1g3240 501 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 29 399 - -
Mal1g3240 501 Pfam Myb/SANT-like DNA-binding domain 123 209 IPR044822 -
Mal1g3240 501 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 410 491 - -
Mal1g3240 501 MobiDBLite consensus disorder prediction 1 22 - -
Mal1g3240 501 ProSiteProfiles Myb-like domain profile. 116 181 IPR001005 -
Mal1g3240 501 MobiDBLite consensus disorder prediction 232 259 - -
Mal1g3240 501 MobiDBLite consensus disorder prediction 232 275 - -
Mal1g3240 501 CDD GT1 123 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3240 Mal-Chr1 51785770 51788816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3240 403 496 Trihelix Transcription Factor Family AT5G03680 36.036 4.26e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mal1g3240 Myb_DNA-bind_4 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3240 - - mtr:MTR_1g060990 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3240 1 51785770 51788816 Mal1g3240 1 51785770 51788816 ECH
Mal3g4336 3 122823876 122826092 Mal1g3240 1 51785770 51788816 PCT