Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3235 ATGTTTGCTCTTTTTCTGAAAAATCTCTCCTTTCTCCCTTCTTCTTTTTCATCATCGCAAGTTCGCAAGCTTTTTAATAGGTTTCAAGTGTGTGAGTTCTCATCATCATCATCATCATCATCATCTCCTTGTCCTCCTCCGCAACCTCCTGAGGTTTCAGTATGGTGGCACCTTGACAGCTGTCCTGTGCCTTCTGGGGTTAGCTTTTCGAAGGTAGCACCTTCAATTATGGCAGCCGTTAGAGCTAACGGGATTATGGGTAGAATTCATATTCGCGCTTATGGTGATTTTAATTCTTCAGAGGTCGACAAAGAGGCTCTTCATTCAACCAACATTACTCTAATCTCCTTTACCGATTCTCTTTTTTTCAATAAAAAAATAGATACAGTTGGAAAGAACAATGCCTATAAGCATTTTGTTATGGATCTTAATGATTGGGTTTCCACAAATCCTCCGCCCGTACACCTCTTTTTTATATTTGGTAATGGAGACTTCTCTAGTAATGGCATATTGCACCGGTTAAGAATGTGCAACTATAATATCTTGCTTGCATGTCCAGGAAGACCTCATGTTGCTCTCTGCCATGCAGCAACTATAATGTGGGACTGGTCTTCGATGCTCAAGAGGGAAGACCTTACAGGAAAACATTTCAATTATCCTCCTGATGGTCCATTTATTTCGTGGTATGGAAACTCAAATATGCCTCTTGAAAACCCCTTCTCAGTTGCTGAGTTGCACACATCTTCACAAAATGCGGAGATCTACAAACCTTCCTTGGACATAAAGTTAGATCTTCGTGCAGAGTTGACAAAGTGTGATATGCCTTTGGGTAAACGCTTCTATGGAGTTAAAAAGTTTTCCGACTTTCTAATATCTATACCACATGTACAACTCGAGTATTTAGGACAAGGTAATTTTTGGGTGTGTTTGGTCTCATCAAGGACATCTGCAGTTAAGAATAAGCAGAAGGATGTTGCCGCAACTCAAAAGCTAAACAATGAGGGTAAAAATATGGATAAAAGTGTAGATGGGATTCCCGGTATATCCTCATTGTGTGTTGAAGATCCCAAGTCATCAGAACTGCAACATGATCTTAGTCATCCTCATAAGCCTTATTGGGATAACTTTAGGGCTTCGGTATGGTGGGACTTTGACAGTTGTGGCGTCCCTTCTGACATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAACGGAATTAAAGGCCCTATTCATATTGACGCTTATGGAGATGTTTCTCAGTTTTCAAAGAACAAACAAGAAGCACTTTTCTTATCCGGTGTTGATCTCCACCACATTCCAGGTGGAAAGAACAAAAACAAATGCTTTACGGATTGGCTTTCGCAAAGTCCCCCCCCCCCCCCCCCCCCCCCCGGACACCTCTTTTTGATATCTGGTGATGAAGGCTTCGACTTTGCCAGCAAATTGCATCGGACCTTGTGGAGGAGGAAAGACAACTTCTTTCTTGCATGTCCAGGAAAGGCTCATGGTTATGCCTGCAAAGTAGCAACTATAGTGTGGCATTGGTCTTCAGTGCTCAAGGGGAACTATCTTACTGGAAAATATATCAAAAATCCTCCTTTTTGGTATATTAAGGCGCGGGCATGTGGGCGTCTTGAATATCCTCCTGGGTGGTATAGAAACTCGAAGGTGCCTCATGAAAACCCCTTCTCAGCTTCTGAGCAGCCCACATCCTCACAAAATGCAGAGATCCGCTACCCTTTATATGAAGTTCATGAGTCGGTTTCTAGGAAGATTATGAAGTTATTGAGTTCATACCCGAATGGGATCTCCATTGGAGATCTTGATTTACTGTGTAGAATGGGTTTGGCTGGAGGCTTATGCGGATATAAAAAGTTTTCCAACATTCTAGCATCTATACCACATGTACAAGTCTTGTATATAGGAGATGATAATTTTTGTGTACGTTTGATCCCATCAACATCTAATGTTAAGAAGAAGCAGTGTGCTGTTAAGAATGAGCAGAGGGATGTCAATCATTCTAGAATGCCTGTGTTATTTTCTACTAGTTCCTTTTGGGATGATGTGGAATCTTTTGTTTTCACGTCTAGAGGATCACGTCTTCTTTCCCGGTCAAGAAGCAGGGAGGATATGGCTCATAGATTACAGAAGCATGGACCCCTGTTTCTTAGGTCTCTCACTGAAAATCAAATCCTTCAATTGGTGGAGTTGTTGATAGCTGAGAAGAATTTGTTGGAGGAAGACCCCTCTGTAATGGTCCAGCCCAACTATGAAGATGGATCAGATGAGGAAGACATGGATGAGATATGGTTCAAAAGGAATACTACAAGGCCCAAGTGGCTACTTAAGAAAGTCTAG 2373 0.4176 MFALFLKNLSFLPSSFSSSQVRKLFNRFQVCEFSSSSSSSSSPCPPPQPPEVSVWWHLDSCPVPSGVSFSKVAPSIMAAVRANGIMGRIHIRAYGDFNSSEVDKEALHSTNITLISFTDSLFFNKKIDTVGKNNAYKHFVMDLNDWVSTNPPPVHLFFIFGNGDFSSNGILHRLRMCNYNILLACPGRPHVALCHAATIMWDWSSMLKREDLTGKHFNYPPDGPFISWYGNSNMPLENPFSVAELHTSSQNAEIYKPSLDIKLDLRAELTKCDMPLGKRFYGVKKFSDFLISIPHVQLEYLGQGNFWVCLVSSRTSAVKNKQKDVAATQKLNNEGKNMDKSVDGIPGISSLCVEDPKSSELQHDLSHPHKPYWDNFRASVWWDFDSCGVPSDISFLNVAPSIMGVLRANGIKGPIHIDAYGDVSQFSKNKQEALFLSGVDLHHIPGGKNKNKCFTDWLSQSPPPPPPPPGHLFLISGDEGFDFASKLHRTLWRRKDNFFLACPGKAHGYACKVATIVWHWSSVLKGNYLTGKYIKNPPFWYIKARACGRLEYPPGWYRNSKVPHENPFSASEQPTSSQNAEIRYPLYEVHESVSRKIMKLLSSYPNGISIGDLDLLCRMGLAGGLCGYKKFSNILASIPHVQVLYIGDDNFCVRLIPSTSNVKKKQCAVKNEQRDVNHSRMPVLFSTSSFWDDVESFVFTSRGSRLLSRSRSREDMAHRLQKHGPLFLRSLTENQILQLVELLIAEKNLLEEDPSVMVQPNYEDGSDEEDMDEIWFKRNTTRPKWLLKKV* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3235 790 Pfam OST-HTH/LOTUS domain 592 643 IPR025605 -
Mal1g3235 790 Pfam OST-HTH/LOTUS domain 278 307 IPR025605 -
Mal1g3235 790 PANTHER EMB|CAB71880.1 676 755 - -
Mal1g3235 790 PANTHER LIMKAIN B LKAP 676 755 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal1g3235 790 PANTHER LIMKAIN B LKAP 364 679 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal1g3235 790 CDD PIN_limkain_b1_N_like 52 186 - -
Mal1g3235 790 PANTHER EMB|CAB71880.1 12 355 - -
Mal1g3235 790 CDD PIN_limkain_b1_N_like 379 503 - -
Mal1g3235 790 PANTHER LIMKAIN B LKAP 12 355 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal1g3235 790 PANTHER EMB|CAB71880.1 364 679 - -
Mal1g3235 790 Pfam OST-HTH Associated domain 711 757 IPR025677 -
Mal1g3235 790 Pfam NYN domain 52 197 IPR021139 GO:0004540
Mal1g3235 790 Pfam NYN domain 377 489 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3235 Mal-Chr1 51492830 51503515 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3235 377 646 C2H2 Transcription Factor Family AT5G61190 30.479 8.99e-17 83.2