Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3229 ATGGAGAATTCACGAAGACCGTTTGATAGATCAAAAGAACCGATTTTGAAGAGACCCAGATTAATAGAAAATCCAGATCGTGCTCCGAATTCAAATGTTCGACCGATTCAACAGAGAAAACAACAATTGGCTTCTGCTACACGGTTCAGACAGAATGATAGAGAGTTGGAAAGTAGTGATTTTGGTGGCGGTGGTGGTGGTTATGAGCCGCAACCGATTCGGTTTGAGGAGCTAGTGGAACAGTATAAGAGTGCACTTGCAGAGCTTACTTTCAATTCGAAACCGATGATTACAAACTTGACTATAATTGCAGGGGAGAATCAAGCTGCTGAGAAGGCTATTGCTGCCACTATTTGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGACGGGATTACATAAAATACTTTGCTGCCAAACTACCCGAGGTATTCTGCAAGGCATACAGACAGGTAGATCCTTCTGTCCGTCAAAGTATGAGACATCTTTTTGGAACTTGGAAAGGAGTTTTTCCTCCTCAGACCCTTCAGGTTATCGACAGGGAACTGGGCTTCACTCCAGCAATCAATGGTTCGTCTTCAGCATCTGATACACTCAGGAGTGATTCACAGTCACAGCCTTCGCCTCACAGTATTCATGTGAATCCCAAGTATTTTGAAAGACAGCATCTTCAGCCGTCCAGCAGGACTAAAGGAGTTGGTGGTGACATGACTGCAGCAATCGCGAACGTAAATGACGGCTATGAGAGGCCTGCTAGAGATTTGGGTGTTGCACGAGCATGGAATAATCAGCGCACTCATAGAGATCCATTCGACGATTCTGTTCCAGAAAAGACCATCAGTGCATCATATGGAGGCAATGAACATGGTTCCAATCTTTCAAGGAATTTGGGCATGGGTATTGGCAGAACTGATGGTAGGGTAACCGAGTCAGGACACAGAAATTTGTACAGCAAAGCTGCTGCTGGTGTTTCAGGGACTATATCTAGGCAAAGAAATGGTGTTGGCCTCGAGCATAGATTTTCAAATACTGAAGAACCTACGATTTTGGATGCACAACATCAGCCAATTCGAGACATAACTGGCATACATAGCTGGAAAAATTCTGAGGAAGAGGAGTACTCATGGGATGAGATGCACACTGGATTGACTGGTCATGGTGTCCGTAACAACTTGGGCAATGATGCTTGGGCCGCTGATGATGAGAATTTGGAAGCTGAAGATAACCACCACCAAATGAGAAATGTTTTTGGGGCCAGTGTTGATAGAGAAGTGCCCAGTAGATCTCAAGCCTCTGAAAAGAAAGAGTTACATGCATTTCGGCACCATCCATCATTATCATGGCAATTGCAGGATCAGCAATCAATTGATGAATTGGATAGGAAACCGGGTCAATTGGATGGATCTACGTCAATGTCTGGTTCCTTACCAGCCAATGCAAGTTCTTCTGCTGCTAGGATGGGGAATCCTGCTTTCCTTCCAAATGCAAGAGTAGGATTGGCAGGAATTGAGGGACAGCAATTTCATTCTGCTGGATCTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACGGTCTCCATCGCTACCAAGTATTGACCACTCCCATCTTATGAAAAATTTGGCTACGCAAGACCATCCCCACACTCGTAAAACATCTCATTTTTTGGGAGGTCTGCAGAGCCATTATAATAAAGATTCTTCGCCCACCCTTTCTCCTAATATTCCGGTTGGAGACTTGCGAAGATCATCACAACTAAAAGACTTGCAGAGTCCATTATCTTCAGTGAGTTTTCAGCCAAGGTATCAGCAACAACTGAGCTCTTCACACGCTGAAGTAACTGTTAAGACTGAGAAGCCACTGTTGTCCAAAGTTTCTCTAGCCAGAAAAACCTCAGAGCAGCCAGCCAGAAGTCATACAAAAGCTGGAAGTGTGAAGAGTGGAATATTTTCCAACATGCCAACTACTAGTAGTCTTCCATCTCTGTTAGGGGCTCGGCCTTCTCAGTCAGCTGGTTCTTCCTCTGCCAAATTAATTTCTTCAGTGTCTGCAAATGCATCTCCATCTTCATCTGCTTTGCCAAAAAGACCTCGAAGAAAGGCTGGACAACCACTGAGGACATCTACTCTATCACCAGCTTCCTCGAATGTTAGCAGTGCCTCAGGCCAGTCATCGGGTGCTACCAATAATACCTCGAATCCACTTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCCACAGAAACCGAGACACCGGCCGAGGTGCCGTCTGAGATGCTGCCTCGATTGGAAGATCACTGCGACAGCTTTAGTACCAGTAGCTCTATGCCTGTTGCTTCATTATCTGGTTCTGCTGCTGTCCCTCTCCCATCTACCAAAGATGAGTTAGATGATACTGCGAAAACACCTATGTCCTTAACTGAATCAACCAACACAGATATTAGAAATGTCATTGGCTTTGAGTTTAAGCCTAATGTAATAAGAAAGTTGCATCCATCTGTAATTAGTGGATTATTTGATGATTTTGCACATCATTGCAGCATTTGTGGCCTTAAACTTAAATTCCAAGAACAGTTTAACAGACACTTGGAGTGGCATACCACAAGAGAAAGAGAACGCAATGGTTTAATTACGGCATCAAGATGGTATCTGAACTCAAGTGACTGGGTTGCTGGCAAAGCTGAATGTCCATCTGAGAATGAGTTAACTGATTCTGTAGATTCACAAGACAAGGAAACAGACGAATATCAAGAGGATGCAACGGTTCTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATGTTTACTGTCACGAAAATAGTGAGTGGAGGTTCAAAGGGGCTGTTTACATGACTAGCGCTGATATCGATACTGAGATGGGAATCAAAGATGTGATTCCTGGAAGGGGTCCCATCATTCATACAAGATGCTTATTAGATAACTCGTTAGCGAGTGTCCTCAAGACGGAACAGGATTAA 3051 0.4392 MENSRRPFDRSKEPILKRPRLIENPDRAPNSNVRPIQQRKQQLASATRFRQNDRELESSDFGGGGGGYEPQPIRFEELVEQYKSALAELTFNSKPMITNLTIIAGENQAAEKAIAATICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPSVRQSMRHLFGTWKGVFPPQTLQVIDRELGFTPAINGSSSASDTLRSDSQSQPSPHSIHVNPKYFERQHLQPSSRTKGVGGDMTAAIANVNDGYERPARDLGVARAWNNQRTHRDPFDDSVPEKTISASYGGNEHGSNLSRNLGMGIGRTDGRVTESGHRNLYSKAAAGVSGTISRQRNGVGLEHRFSNTEEPTILDAQHQPIRDITGIHSWKNSEEEEYSWDEMHTGLTGHGVRNNLGNDAWAADDENLEAEDNHHQMRNVFGASVDREVPSRSQASEKKELHAFRHHPSLSWQLQDQQSIDELDRKPGQLDGSTSMSGSLPANASSSAARMGNPAFLPNARVGLAGIEGQQFHSAGSESPSGQSPLRQRSPSLPSIDHSHLMKNLATQDHPHTRKTSHFLGGLQSHYNKDSSPTLSPNIPVGDLRRSSQLKDLQSPLSSVSFQPRYQQQLSSSHAEVTVKTEKPLLSKVSLARKTSEQPARSHTKAGSVKSGIFSNMPTTSSLPSLLGARPSQSAGSSSAKLISSVSANASPSSSALPKRPRRKAGQPLRTSTLSPASSNVSSASGQSSGATNNTSNPLANLLSSLVAKGLISTETETPAEVPSEMLPRLEDHCDSFSTSSSMPVASLSGSAAVPLPSTKDELDDTAKTPMSLTESTNTDIRNVIGFEFKPNVIRKLHPSVISGLFDDFAHHCSICGLKLKFQEQFNRHLEWHTTRERERNGLITASRWYLNSSDWVAGKAECPSENELTDSVDSQDKETDEYQEDATVLADENQCLCVLCGELFEDVYCHENSEWRFKGAVYMTSADIDTEMGIKDVIPGRGPIIHTRCLLDNSLASVLKTEQD* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3229 1016 MobiDBLite consensus disorder prediction 1 67 - -
Mal1g3229 1016 Gene3D - 72 199 IPR008942 -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 562 594 - -
Mal1g3229 1016 SMART 558neu5 77 199 IPR006569 -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 640 666 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 433 503 - -
Mal1g3229 1016 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Mal1g3229 1016 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 1013 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 442 457 - -
Mal1g3229 1016 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 1013 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mal1g3229 1016 MobiDBLite consensus disorder prediction 481 503 - -
Mal1g3229 1016 CDD CID_Pcf11 79 195 - -
Mal1g3229 1016 SUPERFAMILY ENTH/VHS domain 77 198 IPR008942 -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 799 824 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 522 548 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 697 748 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 205 250 - -
Mal1g3229 1016 Pfam CID domain 82 192 IPR006569 -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 1 24 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 523 548 - -
Mal1g3229 1016 ProSitePatterns Zinc finger C2H2 type domain signature. 864 884 IPR013087 -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 205 227 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 642 666 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 719 748 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 30 49 - -
Mal1g3229 1016 MobiDBLite consensus disorder prediction 569 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3229 Mal-Chr1 51162311 51168289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3229 65 394 C2H2 Transcription Factor Family AT4G04885 42.857 1.17e-61 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g3229 CID 9.7e-15 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3229 K14400 - gmx:100807857 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3229 1 51162311 51168289 Mal1g3229 1 51162311 51168289 ECH
Mal3g4330 3 122701160 122706961 Mal1g3229 1 51162311 51168289 PCT