Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3227 ATGAACCCAAAAGATGAAAAAAACTCTCCCAAATTTTCATCTCCTTTGAACTACTTGGATTCTTCATCTTCAGCTTCAATGGAGTTTGAAACATCAGTGCCTGTGCCTATGGAATGTTTGCAACTGAACAACCCTGTTCCTCCATTTCTTTCAAAAACATTTGATTTAGTTGATGACCCTTCATTGAATCCGATCATATCATGGAGTTCCAATGGTGCTAGCTTTGTTGTTTGGGACCCTTTGGAGTTTGCTAGAATTGTCTTGCCTAGACACTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGCAAAATCGATACAGACAAATGGGAGTTTTTCAATGAAGGTTTTCAGAAAGGGAAGAAGCACTTACTGAAGAACATTCAAAGGCGAAGGTCGTCCCAATCTCAACAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGCAGGGAAATCTGGAGTCGAGGTTGAGATAGAAAGGTTGAGGAAAGAGAGGAGTGTGTTAATGCAAGAAGTAGTTGATTTGCAGCAACAGCAACGGATGACGGTTCATCATGCAGGTAGTGTGAATGAAAGGCTCCAATCTGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTAGCCAAGTTGTTTTCAAATCCGGACTTTTTAGCGCGACTTAAGCAGAAGAATGAACAGAGAGATATAGAATCTCCAAGAGTGAGAAGGAAGTTTGTTAAGCAACACCAAAATGAAGAAGAAAATCTCAAAGACGGAAAGATTGTGAGGTACCAACCAAATAGGGGGGAGATGAACATGTCTTGTGAAACTCAAGAACTAAGTCCAGTTTCCATTGAAAACTCTCCTCACTATCTTTCACATGATTTGGCAAGAGAAATGACTGCAAGTGAAGAAGATTTTACCTCTCAAATTGAGAATATTTCATCAGATGAATATGCTGCAATGCATGGAATTATTATGTCAAATTCAGAAACCAATATAATTGGTGAAGGATCATCTAGCTTTGGACTAGGAGAACCTCTTTTCAAAGGGAAAAATGTTATTAGTCCAAATGAAGAAGTTATTCCTGAGAATTTTGAAGGCTTTCAAGAGTTTCAATCTCTTGGAACTGAAGGCATTATCAAGCAAGAAGATATATGGGACCCTAATTTCAATGTTGGTGCTGTTGCTACTTCAAGCTGTGGGAATGAGATGTGGGGAAATCCTATGAATTATGGAGTACCTGACTTTGGAGTTGTTACAAGTGGTGACATGTCAGATATGTGGGATATTGGTTTTGGAAGTTTAGGTATTGATAAGTGGCCAGCTGATGAATCTCCTTTTGATGAAATAGATAGTCAAGGTGGTAAGCCAAAAGATGATAGACCTACCTAA 1398 0.387 MNPKDEKNSPKFSSPLNYLDSSSSASMEFETSVPVPMECLQLNNPVPPFLSKTFDLVDDPSLNPIISWSSNGASFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQSQQVGNYVGSSSDAAGKSGVEVEIERLRKERSVLMQEVVDLQQQQRMTVHHAGSVNERLQSAEQRQKQMVSFLAKLFSNPDFLARLKQKNEQRDIESPRVRRKFVKQHQNEEENLKDGKIVRYQPNRGEMNMSCETQELSPVSIENSPHYLSHDLAREMTASEEDFTSQIENISSDEYAAMHGIIMSNSETNIIGEGSSSFGLGEPLFKGKNVISPNEEVIPENFEGFQEFQSLGTEGIIKQEDIWDPNFNVGAVATSSCGNEMWGNPMNYGVPDFGVVTSGDMSDMWDIGFGSLGIDKWPADESPFDEIDSQGGKPKDDRPT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3227 465 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g3227 465 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 34 462 - -
Mal1g3227 465 Coils Coil 159 186 - -
Mal1g3227 465 MobiDBLite consensus disorder prediction 444 465 - -
Mal1g3227 465 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 34 462 IPR027725 -
Mal1g3227 465 Gene3D - 41 139 IPR036388 -
Mal1g3227 465 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g3227 465 MobiDBLite consensus disorder prediction 1 21 - -
Mal1g3227 465 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g3227 465 SUPERFAMILY "Winged helix" DNA-binding domain 44 138 IPR036390 -
Mal1g3227 465 MobiDBLite consensus disorder prediction 443 465 - -
Mal1g3227 465 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g3227 465 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g3227 465 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3227 Mal-Chr1 51144822 51147234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3227 33 444 HSF AT5G03720 43.925 1.56e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mal1g3227 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3227 K09419 - gmx:100780835 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3227 1 51144822 51147234 Mal1g3227 1 51144822 51147234 ECH