Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3212 ATGTTTCCTCTTTTTCTGAAAAATCTCTCCTTTCTCCCTTCTTCTTTTTCATCATCGCAAGTTCGCAAGCTTTTTACTAGGTTTCAAGTGTGTGAGTTCTCATCATCATCATCATCATCATCATCTCCTTGTCCTCCTCCGCAACCTCCTGAGGTTTCAGTATGGTGGCACCTTGACAGCTGTCCTGTGCCTTCTGGGGTTAGCTTTTCGAAGGTAGCACCTTCAATTATGGCAGCCGTTAGAGCTAACGGGATTATGGGTAGAATTCATATTCGCGCTTATGGTGATTTTAATTCTTCAGAGGTCGACAAAGAGGCTCTTCATTCAACCAACATTACTCTAATCTCCTTTACCGATTCGCTTTTTTTCAATAAAAAAATAGATACAGTTGGAAAGAACAATTTCTATAAGCATTTTCTTATGGATCTTAATGATTGGGTTTCCACAAATCCTCCGCCCGTACACCTCTTTTTTATATTTGGTAGACCTCATGTTGCTCTCTGCCATGCAGCAACTATAATGTGGGACTGGTCTTCGATGCTCAAGAGGGAAGACCTTACAGGAAAACATTCCAATTATCCTCCTGATGGTCCATTTAGTTCGTGGTATGGAAACTCAAATATGCCTCTTGAAAACCCCTTCTCAGTTGCTGAGTTGCACACATCTTCACAAAATGAGGAGATCTACAAACCTTCCTTGGACATAAAGTTAGGTGAAAATATTGTGAAAATATTGTGTTTGCACCCAAATGGGATCTCTATGGGAGATCTTCGTGCAGAGTTGACCAAGTGTGATATGCCTTTGGGTAAACGCTTCTATGGACTTAAAAAGTTTTCCGACTTTCTAATATCTATACCACATTTACAACTCGAGTATTTAGGACAAGGTAATTTTTGGGTTTGTTTGGTCCCATCAAGGACATCTGCAGTTAAGAATAAGCAGAAGGATGGTGCCGCAACTCAAAAGCTAAACAATGAGGGTAAAAATATGGATAAAAGTGTAGATGGGATTCCCGGAATATCCTCATTGTGTGTTGAAGAGCCCAAGTCATCAGAACTGCAACACGATCTTAGTCATCCTCATAAGCCGTATTGGGATAACTTTAGGGCTTCGGTATGGTGGGACTTTGACAGTTGTGGCGTCCCTTCTGACATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAATGGAATTAAAGGCCCTATTCATATTGACGCTTATGGAGATGTTTCTCAGTTTTCAAAGATCAAACAAGAAGCACTTTTCTTATCCGGTGTTGATCTCCACCACATTCCAGGTGGAAAGAACAAAAACAAATGCTTTACGGATTGGCTTTCGCAAAGTCCCCCACCCGGACACCTCTTTTTGATATCTGGTGATGAAGGCTTCGACTTTGCCAGCAAATTGCATCGGACCTTGTGGAGGAGGAAAGACAACTTCTTTCTTGCATGTCCAGGAAAGGCTCATGGTTATGTCTGCAAAGTAGCAACTATAGTGTGGCAGTGGTCTTCAGTGCTGAAGGGGAACTATCTTACTGGAAAATATATCAATTATCCTCCTTTTTGGTATATTAAGGCGCGGGAATGTGCGCGTCTTGAATATCCTCCCGGGTGGTATAGAAACTCGAAGGTGCCTCATGAAAACCCCTTCTCAGCTGCTGAGGAGCCCACATCCTCACAAAATGCAGAGATCCGCTACCCTTTATATGAAGTTCATGAGTCGGTTTCTAGGAAGATTAAGAAGCTATTGAGTTCATACCCGAATGGGATCTCCATTGGAGATCTTGATTTACTGTGTAGAATGGGTTTTGCTGGAGGCTTATGCGGATATAAATTTTTTTCCAACATTCTAGCATCTATACCACATGTACAAGTCTTGTATATAGGAGATGATAATTTTTGTGTACGTTTGATCCCATCAACATCTAATGTTAAGAAGAAGCAGTGTGCTGTTAAGAATGAGCAGAGGGATGTCAATCATTCAGGAATGCCTGTGTTATTTTCTACTAGTTCCTTTTGGGATGACGTGGAATCTTTTGTTTTCACGTCTAGAGGATCACGTCTTCTTTCCCGGTCAAGAAGCAGGGAGGATATGGCTCATAGATTACAGAAGCATGGACCCCTGTTTCTTAGATCTCTCACTGAAAATAAAATCCTTCAATTGGTGGAGTTGTTGATAGCTGAGAAGAAATTGTTGGAGGAAGACCCCTCTGTAATGGTCCAGCCCAACTATGAAGATGAATCAGATGAGGAAGACATGGATGAGATATGGTTCAAAAGGAATACTACAAGGCCCAAGTGGCTACTTAAGAAAGTCTAG 2334 0.4143 MFPLFLKNLSFLPSSFSSSQVRKLFTRFQVCEFSSSSSSSSSPCPPPQPPEVSVWWHLDSCPVPSGVSFSKVAPSIMAAVRANGIMGRIHIRAYGDFNSSEVDKEALHSTNITLISFTDSLFFNKKIDTVGKNNFYKHFLMDLNDWVSTNPPPVHLFFIFGRPHVALCHAATIMWDWSSMLKREDLTGKHSNYPPDGPFSSWYGNSNMPLENPFSVAELHTSSQNEEIYKPSLDIKLGENIVKILCLHPNGISMGDLRAELTKCDMPLGKRFYGLKKFSDFLISIPHLQLEYLGQGNFWVCLVPSRTSAVKNKQKDGAATQKLNNEGKNMDKSVDGIPGISSLCVEEPKSSELQHDLSHPHKPYWDNFRASVWWDFDSCGVPSDISFLNVAPSIMGVLRANGIKGPIHIDAYGDVSQFSKIKQEALFLSGVDLHHIPGGKNKNKCFTDWLSQSPPPGHLFLISGDEGFDFASKLHRTLWRRKDNFFLACPGKAHGYVCKVATIVWQWSSVLKGNYLTGKYINYPPFWYIKARECARLEYPPGWYRNSKVPHENPFSAAEEPTSSQNAEIRYPLYEVHESVSRKIKKLLSSYPNGISIGDLDLLCRMGFAGGLCGYKFFSNILASIPHVQVLYIGDDNFCVRLIPSTSNVKKKQCAVKNEQRDVNHSGMPVLFSTSSFWDDVESFVFTSRGSRLLSRSRSREDMAHRLQKHGPLFLRSLTENKILQLVELLIAEKKLLEEDPSVMVQPNYEDESDEEDMDEIWFKRNTTRPKWLLKKV* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3212 777 CDD PIN_limkain_b1_N_like 52 161 - -
Mal1g3212 777 PANTHER EMB|CAB71880.1 12 350 - -
Mal1g3212 777 PANTHER LIMKAIN B LKAP 353 665 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal1g3212 777 Pfam OST-HTH Associated domain 698 745 IPR025677 -
Mal1g3212 777 Pfam NYN domain 369 477 IPR021139 GO:0004540
Mal1g3212 777 Pfam NYN domain 52 154 IPR021139 GO:0004540
Mal1g3212 777 ProSiteProfiles OST-type HTH domain profile. 233 304 IPR025605 -
Mal1g3212 777 PANTHER LIMKAIN B LKAP 666 742 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal1g3212 777 PANTHER EMB|CAB71880.1 666 742 - -
Mal1g3212 777 PANTHER LIMKAIN B LKAP 12 350 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal1g3212 777 Pfam OST-HTH/LOTUS domain 239 299 IPR025605 -
Mal1g3212 777 Gene3D - 236 303 IPR041966 -
Mal1g3212 777 PANTHER EMB|CAB71880.1 353 665 - -
Mal1g3212 777 CDD PIN_limkain_b1_N_like 371 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3212 Mal-Chr1 49858166 49867237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3212 369 513 C2H2 Transcription Factor Family AT5G61190 36.129 5.62e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3212 - - mtr:MTR_4g098990 589.726